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The map label for this gene is yiaD [H]

Identifier: 120613283

GI number: 120613283

Start: 5182178

End: 5182831

Strand: Direct

Name: yiaD [H]

Synonym: Aave_4652

Alternate gene names: 120613283

Gene position: 5182178-5182831 (Clockwise)

Preceding gene: 120613280

Following gene: 120613288

Centisome position: 96.81

GC content: 68.81

Gene sequence:

>654_bases
ATGCGTACTTCCCGCACACTCATCGCCGCCACCGCCGCCGTACTGCTCGCCAGTGGCTGCGCCAACATGACCGATACCCA
GCGTCGCACCGCCACCGGCGCGGGCGTGGGCGCCGCCGGCGGTGCCGTCCTGGGAGCCGTGACGGGCGGCAATGCCGGCA
CCGGCGCGCTGATCGGCGCCGGGGTGGGTGCCCTGGGTACCTACATCTGGTCCCAGCACATGGAGCGCCAGAAGCAGGAA
ATGCAGCAGGTGACGCAGGGCACCGGCGTGGTGGTCACCCAGACGCAGGACAACCAGCTCAAGCTCGATATTCCCAGCGA
CATCTCGTTCGCGACCAATCGCTCAGACATCCAGCCCAACTTCGCCCCGGTGCTGGACCGGTTCGCCGAAGGGCTGCGCA
ACAATCCCAATGCCGAGGTGCGCATCGTCGGCTACACCGATTCCACCGGCAACGATGCGATCAACAACCCGCTGTCGCTC
GACCGGGCTACCAGCACGCGCAACTATCTCACTGCCCGCGGCGTGAACGGAGCGCGCGTCCAGGTGGAAGGCCGGGGCGC
ACGCGAGCCCGTGGCCACCAACGATACGGCAGAAGGCCGCGCGCGGAACCGCCGCGTGGAGATCTACGTGGGCGAGCGCC
CGCGCCAGGGCTGA

Upstream 100 bases:

>100_bases
ACGGATGGGTTCGGGGACGCGAAGAATTCCCCCAGGCGCCAGCCAGGCCGTGCAAGGCCGGCCAGGGCGTCCCACCGCAC
GACAACAGGAGAGAACTTCC

Downstream 100 bases:

>100_bases
CAACCTTGCCTGCCGCTCGGTCAGCCGGCCGAGCGCAGCAGGTTGGCCAGCTCCACGGCCGATTTGACCTGCATCTTGTC
GAAAACACGTGCGCGGTGGA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MRTSRTLIAATAAVLLASGCANMTDTQRRTATGAGVGAAGGAVLGAVTGGNAGTGALIGAGVGALGTYIWSQHMERQKQE
MQQVTQGTGVVVTQTQDNQLKLDIPSDISFATNRSDIQPNFAPVLDRFAEGLRNNPNAEVRIVGYTDSTGNDAINNPLSL
DRATSTRNYLTARGVNGARVQVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG

Sequences:

>Translated_217_residues
MRTSRTLIAATAAVLLASGCANMTDTQRRTATGAGVGAAGGAVLGAVTGGNAGTGALIGAGVGALGTYIWSQHMERQKQE
MQQVTQGTGVVVTQTQDNQLKLDIPSDISFATNRSDIQPNFAPVLDRFAEGLRNNPNAEVRIVGYTDSTGNDAINNPLSL
DRATSTRNYLTARGVNGARVQVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG
>Mature_217_residues
MRTSRTLIAATAAVLLASGCANMTDTQRRTATGAGVGAAGGAVLGAVTGGNAGTGALIGAGVGALGTYIWSQHMERQKQE
MQQVTQGTGVVVTQTQDNQLKLDIPSDISFATNRSDIQPNFAPVLDRFAEGLRNNPNAEVRIVGYTDSTGNDAINNPLSL
DRATSTRNYLTARGVNGARVQVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=229, Percent_Identity=33.6244541484716, Blast_Score=112, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22783; Mature: 22783

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSRTLIAATAAVLLASGCANMTDTQRRTATGAGVGAAGGAVLGAVTGGNAGTGALIGA
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
GVGALGTYIWSQHMERQKQEMQQVTQGTGVVVTQTQDNQLKLDIPSDISFATNRSDIQPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
FAPVLDRFAEGLRNNPNAEVRIVGYTDSTGNDAINNPLSLDRATSTRNYLTARGVNGARV
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG
EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRTSRTLIAATAAVLLASGCANMTDTQRRTATGAGVGAAGGAVLGAVTGGNAGTGALIGA
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
GVGALGTYIWSQHMERQKQEMQQVTQGTGVVVTQTQDNQLKLDIPSDISFATNRSDIQPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
FAPVLDRFAEGLRNNPNAEVRIVGYTDSTGNDAINNPLSLDRATSTRNYLTARGVNGARV
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG
EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]