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The map label for this gene is yddE [C]

Identifier: 120613075

GI number: 120613075

Start: 4933950

End: 4934834

Strand: Direct

Name: yddE [C]

Synonym: Aave_4439

Alternate gene names: 120613075

Gene position: 4933950-4934834 (Clockwise)

Preceding gene: 120613074

Following gene: 120613076

Centisome position: 92.18

GC content: 73.11

Gene sequence:

>885_bases
ATGCGCCAGCGCCCCTTCAAGCAAGTCGATGTGTTCACCGAGCGCCCCTACCTCGGCAACCCGCTGGCCGTGGTGCTCGA
CGGCGAGGGCCTGGCCACCGAGGAGATGCAGCATTTCACGAACTGGACCAACCTCTCCGAAGCCACCTTCCTACTGCCGC
CCAGCGAGGAAGGCCGCGCGGCGGGCGCCGACTACCGGGTGCGCATCTTCTGCCCCGGCCGGGAGCTGCCCTTCGCGGGC
CATCCCACGCTCGGCAGCTGCCATGCCTGGCTGGAGGCCGGCGGGCAGCCGCGCACACCGGGCCGTATCGTGCAGGAATG
CGGCGTGGGGCGGGTCACGCTGCGGCAGGACGGCCACCGGCTGGCCTTCGCGGCCCCGCCGCTGATCAAGAGCGGCCCGC
TGGACGAGGCCGAAGTGGAACTGATCGCCCGCGGCCTGGGAGTCGCGCGCACCGACATCGTGGGCCACGCCTGGTGCGAC
AACGGCCCGAACTGGCGCGGCGTGATGCTCTCCTCGGCCGAGGCCGTGCTCGCGCTGCGCCCCGACGGGGCCGTGCTCGG
CACGCTCGACGTGGGCGTGGTGGGCCCGCGCGGCAAGGTCGGCGTGATCGGCAGCCACGGGCAGGCGGACGCGGATCTGC
CGGACTTCGAGGTGCGCGCCTTCTTCCCCGGCCACAACGGCCTGGCCGAAGATCCGGTGACCGGCAGCCTGAACGCCGCG
CTCGCGCAATGGCTGATCGGCGCCCACCTCGCGCCGACCCGCTACATCGCCAGTCAGGGCACCGCCCTGGGCCGTGCGGG
CCGCGTGCACGTGGAGCAGGACGGCGAGCACATCTGGGTGGGCGGCGGCTCCGTCACCTGCGTGGACGGGCAGGTGCTGC
TGTGA

Upstream 100 bases:

>100_bases
CGGCCGCCGGGAAGGGCCGCGCCCGCACGGTCCGGATGCTGCCCCGTCGTGCGCCGTTGCCTGTCCGTTGTCCGTTCGTT
TTTCCACAGGAGCCCTCCCC

Downstream 100 bases:

>100_bases
GCCCGGCGACCTTCGATCCGGCCCGGGCCGCGTGCGTCGATCACCTCGTGGTGATGGCCGCCTCGCTGGACGAGGGCAGC
CGCTGGTGCCGCAGAACGCT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRQRPFKQVDVFTERPYLGNPLAVVLDGEGLATEEMQHFTNWTNLSEATFLLPPSEEGRAAGADYRVRIFCPGRELPFAG
HPTLGSCHAWLEAGGQPRTPGRIVQECGVGRVTLRQDGHRLAFAAPPLIKSGPLDEAEVELIARGLGVARTDIVGHAWCD
NGPNWRGVMLSSAEAVLALRPDGAVLGTLDVGVVGPRGKVGVIGSHGQADADLPDFEVRAFFPGHNGLAEDPVTGSLNAA
LAQWLIGAHLAPTRYIASQGTALGRAGRVHVEQDGEHIWVGGGSVTCVDGQVLL

Sequences:

>Translated_294_residues
MRQRPFKQVDVFTERPYLGNPLAVVLDGEGLATEEMQHFTNWTNLSEATFLLPPSEEGRAAGADYRVRIFCPGRELPFAG
HPTLGSCHAWLEAGGQPRTPGRIVQECGVGRVTLRQDGHRLAFAAPPLIKSGPLDEAEVELIARGLGVARTDIVGHAWCD
NGPNWRGVMLSSAEAVLALRPDGAVLGTLDVGVVGPRGKVGVIGSHGQADADLPDFEVRAFFPGHNGLAEDPVTGSLNAA
LAQWLIGAHLAPTRYIASQGTALGRAGRVHVEQDGEHIWVGGGSVTCVDGQVLL
>Mature_294_residues
MRQRPFKQVDVFTERPYLGNPLAVVLDGEGLATEEMQHFTNWTNLSEATFLLPPSEEGRAAGADYRVRIFCPGRELPFAG
HPTLGSCHAWLEAGGQPRTPGRIVQECGVGRVTLRQDGHRLAFAAPPLIKSGPLDEAEVELIARGLGVARTDIVGHAWCD
NGPNWRGVMLSSAEAVLALRPDGAVLGTLDVGVVGPRGKVGVIGSHGQADADLPDFEVRAFFPGHNGLAEDPVTGSLNAA
LAQWLIGAHLAPTRYIASQGTALGRAGRVHVEQDGEHIWVGGGSVTCVDGQVLL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=302, Percent_Identity=24.8344370860927, Blast_Score=72, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321818, Length=303, Percent_Identity=35.973597359736, Blast_Score=166, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31176; Mature: 31176

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRPFKQVDVFTERPYLGNPLAVVLDGEGLATEEMQHFTNWTNLSEATFLLPPSEEGRA
CCCCCCCHHEEEECCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC
AGADYRVRIFCPGRELPFAGHPTLGSCHAWLEAGGQPRTPGRIVQECGVGRVTLRQDGHR
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCE
LAFAAPPLIKSGPLDEAEVELIARGLGVARTDIVGHAWCDNGPNWRGVMLSSAEAVLALR
EEEECCCCCCCCCCCHHHHHHHHHHCCCEEHHEEEEEECCCCCCEEEEEEECCCEEEEEC
PDGAVLGTLDVGVVGPRGKVGVIGSHGQADADLPDFEVRAFFPGHNGLAEDPVTGSLNAA
CCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHH
LAQWLIGAHLAPTRYIASQGTALGRAGRVHVEQDGEHIWVGGGSVTCVDGQVLL
HHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEECCCEEEECCCEEEEECCEEEC
>Mature Secondary Structure
MRQRPFKQVDVFTERPYLGNPLAVVLDGEGLATEEMQHFTNWTNLSEATFLLPPSEEGRA
CCCCCCCHHEEEECCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC
AGADYRVRIFCPGRELPFAGHPTLGSCHAWLEAGGQPRTPGRIVQECGVGRVTLRQDGHR
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCE
LAFAAPPLIKSGPLDEAEVELIARGLGVARTDIVGHAWCDNGPNWRGVMLSSAEAVLALR
EEEECCCCCCCCCCCHHHHHHHHHHCCCEEHHEEEEEECCCCCCEEEEEEECCCEEEEEC
PDGAVLGTLDVGVVGPRGKVGVIGSHGQADADLPDFEVRAFFPGHNGLAEDPVTGSLNAA
CCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHH
LAQWLIGAHLAPTRYIASQGTALGRAGRVHVEQDGEHIWVGGGSVTCVDGQVLL
HHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEECCCEEEECCCEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]