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The map label for this gene is yjcD [H]

Identifier: 120611845

GI number: 120611845

Start: 3517941

End: 3519752

Strand: Direct

Name: yjcD [H]

Synonym: Aave_3186

Alternate gene names: 120611845

Gene position: 3517941-3519752 (Clockwise)

Preceding gene: 120611844

Following gene: 120611846

Centisome position: 65.72

GC content: 57.17

Gene sequence:

>1812_bases
ATGAAACTCACCGATAAGCAGAAGGACGTCCTCGAGACCTCCGGCCACCTGTTGGTGACGGGCGGGCCGGGCTCGGGGAA
GACGACGATCTCGATTCTGAAAGCTGCCGAAGTAGCCGTGGCCGCGCGACCGGGACAGGAGATCCTGTTTCTGAGTTTCG
CCCGCGCGACCATCAGTCGCGTGATGGAAGCCATCGAGAACGAGCACGACATTCCTCGGCATATCCGTGCCCGGATCACG
GTGGAGACGTATCACTCCTTCTTCTGGCGCATCCTGAAGACGCACGGCTATCTATTGGGGCTACCCCGAAAGCTGTCCAT
TCTGACGCCCGCCAACGAAGCGATCGCGCTATCGACAATCCGCAGGGAATACAAGCCGGCCAGCAAGCTGACGGATGAAG
AACGATCCCAAAAGAAAGGACGAGAGAGCAAAGAGCGCCTAAGACTCGCGACGGAAGATGGTCGGGTGTGCTTCGACCTG
TTCGCCAGCTTGGTCGCCCGGCTTCTGTCGCGCAGCGAGCGACTGCGTAAGCTCGTTGCCACGCGCTATCCGTTCATTAT
CTTAGATGAATTTCAAGATACCAATAGCGACCAGTGGGCAGTAGTGCAACAACTTGGTCGTACCAGCACGTTGCTCGCCC
TGGCGGATCCGGAGCAACGCATCTACGACTGGATTGGCGCGGACCCTGAGCGACTCAACCAGTTCCTCGGAGTGTTCAAG
GCGCAGGAGATCCCGCTGGCGGGGGACAACCACCGCAGTTCTGGCACGGACATCCTGCTGTTTGCAAACGAAGTTCTCAC
GGGCAAGTTCAGCCGGAAGGCCGGCGGGTATACGGGTATCGAACTGAAAGGCTACCCTGCAAACGAGAACGAAGCTGCCG
TCGCCCTCATCACGACGACCTACGCTGCCCGAAAACGCTTGGTCGCTTTGAAGAAGGCAGATTGGTCCCTTGCAGTGCTC
GTTCCAACGAAGAAGATGACGCGTAACGTGTCGGATCTTTTCAGGCAGCCGCCAAGCAAACTTACTGCAATATCTCATAC
CGCTGCGGTCGAACTCGACGCTGCCATCCTGGCGGCCGAAGTCGTCTCCTACCTGATGCAGCCGACAACGCTGTTCCACT
TGGACGGCTTCATCGATCTACTCTGCAACTTCTACCAAGGCAAGGGCGGCGACGCTCCTGCAAAAGGTGACTTGCAGGAG
GCGGACAACATCCGCAAGGCATTTGCGATGTCGGCGCAGAGAAAGGCAGCCGGAAAGGCGCTGCCCGCCAATAGCATCAT
GGTAAGACTCTTGAAGACTTACGAGCAAGCCCGGGTTGTAGCTCTATCAGGTGATCCTGATGCGGATTGGCGCGCCATCA
GACAAGTGCTCGATGCGAGTTCTTGTCCGCGTTGCAAGGAGGTTGGGCTTGAAGTCAAGAACATCCGCCTGCTTGAACGC
GGCACCCAGCTACGTCAGGAACTCTCGGAGGACTGGCGAACCTTTGGCCACTATGAAAACGCTCTGGAAATCACGCGTCA
GGCGTTCGTTCGCGAGCACTTTTCTACTCAAGCGAGCCCTCCCTCAGGCGTCTTCGTCATGAACATGCACAAGGCCAAGG
GAAAGCAGTTCGACGAAGTCGTCATTTTCGAAGGCTGGCCGCGTTACTACAAAAAGCAGATCATCGGAAACCCGGACAGG
ATCATTCGAGGAAACGCTAAAGAAAATCTGGATGAACAGGCCCGACAGAACCTGCGGGTGAGCATCACCCGTGGCAAGCT
TCGCACGACCATCTTGATGCCCGATGCCGACCCGTGCATCGTCTTCAAGTAA

Upstream 100 bases:

>100_bases
AAGCCTGCGTGCACCTTAAGGCTCTGTGCCAGCCGACGGCTGCGGCGCCCGCTGTAGCCACTGTGGTCGCGGCACTTGCG
GCGGACCCGGGCGCCGCTTG

Downstream 100 bases:

>100_bases
TTTCCGGCAACATGAATGCGCCGGCCTCCTGTCTGGGTTTCGCATTGGCCTGCTAAAAGCTGTTCTGCACCATATGCAGC
AAAACGCCCATGGCGACCTT

Product: UvrD/REP helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MKLTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATISRVMEAIENEHDIPRHIRARIT
VETYHSFFWRILKTHGYLLGLPRKLSILTPANEAIALSTIRREYKPASKLTDEERSQKKGRESKERLRLATEDGRVCFDL
FASLVARLLSRSERLRKLVATRYPFIILDEFQDTNSDQWAVVQQLGRTSTLLALADPEQRIYDWIGADPERLNQFLGVFK
AQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEAAVALITTTYAARKRLVALKKADWSLAVL
VPTKKMTRNVSDLFRQPPSKLTAISHTAAVELDAAILAAEVVSYLMQPTTLFHLDGFIDLLCNFYQGKGGDAPAKGDLQE
ADNIRKAFAMSAQRKAAGKALPANSIMVRLLKTYEQARVVALSGDPDADWRAIRQVLDASSCPRCKEVGLEVKNIRLLER
GTQLRQELSEDWRTFGHYENALEITRQAFVREHFSTQASPPSGVFVMNMHKAKGKQFDEVVIFEGWPRYYKKQIIGNPDR
IIRGNAKENLDEQARQNLRVSITRGKLRTTILMPDADPCIVFK

Sequences:

>Translated_603_residues
MKLTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATISRVMEAIENEHDIPRHIRARIT
VETYHSFFWRILKTHGYLLGLPRKLSILTPANEAIALSTIRREYKPASKLTDEERSQKKGRESKERLRLATEDGRVCFDL
FASLVARLLSRSERLRKLVATRYPFIILDEFQDTNSDQWAVVQQLGRTSTLLALADPEQRIYDWIGADPERLNQFLGVFK
AQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEAAVALITTTYAARKRLVALKKADWSLAVL
VPTKKMTRNVSDLFRQPPSKLTAISHTAAVELDAAILAAEVVSYLMQPTTLFHLDGFIDLLCNFYQGKGGDAPAKGDLQE
ADNIRKAFAMSAQRKAAGKALPANSIMVRLLKTYEQARVVALSGDPDADWRAIRQVLDASSCPRCKEVGLEVKNIRLLER
GTQLRQELSEDWRTFGHYENALEITRQAFVREHFSTQASPPSGVFVMNMHKAKGKQFDEVVIFEGWPRYYKKQIIGNPDR
IIRGNAKENLDEQARQNLRVSITRGKLRTTILMPDADPCIVFK
>Mature_603_residues
MKLTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATISRVMEAIENEHDIPRHIRARIT
VETYHSFFWRILKTHGYLLGLPRKLSILTPANEAIALSTIRREYKPASKLTDEERSQKKGRESKERLRLATEDGRVCFDL
FASLVARLLSRSERLRKLVATRYPFIILDEFQDTNSDQWAVVQQLGRTSTLLALADPEQRIYDWIGADPERLNQFLGVFK
AQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEAAVALITTTYAARKRLVALKKADWSLAVL
VPTKKMTRNVSDLFRQPPSKLTAISHTAAVELDAAILAAEVVSYLMQPTTLFHLDGFIDLLCNFYQGKGGDAPAKGDLQE
ADNIRKAFAMSAQRKAAGKALPANSIMVRLLKTYEQARVVALSGDPDADWRAIRQVLDASSCPRCKEVGLEVKNIRLLER
GTQLRQELSEDWRTFGHYENALEITRQAFVREHFSTQASPPSGVFVMNMHKAKGKQFDEVVIFEGWPRYYKKQIIGNPDR
IIRGNAKENLDEQARQNLRVSITRGKLRTTILMPDADPCIVFK

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=350, Percent_Identity=24.5714285714286, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 67546; Mature: 67546

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATISR
CCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHH
VMEAIENEHDIPRHIRARITVETYHSFFWRILKTHGYLLGLPRKLSILTPANEAIALSTI
HHHHHHCCCCCCCHHHHEEEHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHH
RREYKPASKLTDEERSQKKGRESKERLRLATEDGRVCFDLFASLVARLLSRSERLRKLVA
HHHHCCHHHCCCHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TRYPFIILDEFQDTNSDQWAVVQQLGRTSTLLALADPEQRIYDWIGADPERLNQFLGVFK
HCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHH
AQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEAAVALITTT
HCCCCCCCCCCCCCCCEEEEEECHHHHCCCHHCCCCCCCEEEECCCCCCCCCEEEEEEHH
YAARKRLVALKKADWSLAVLVPTKKMTRNVSDLFRQPPSKLTAISHTAAVELDAAILAAE
HHHHHHHHHEEECCCEEEEEECCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VVSYLMQPTTLFHLDGFIDLLCNFYQGKGGDAPAKGDLQEADNIRKAFAMSAQRKAAGKA
HHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LPANSIMVRLLKTYEQARVVALSGDPDADWRAIRQVLDASSCPRCKEVGLEVKNIRLLER
CCHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHH
GTQLRQELSEDWRTFGHYENALEITRQAFVREHFSTQASPPSGVFVMNMHKAKGKQFDEV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCCCEE
VIFEGWPRYYKKQIIGNPDRIIRGNAKENLDEQARQNLRVSITRGKLRTTILMPDADPCI
EEECCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCEEEEEEECCEEEEEECCCCCCEE
VFK
EEC
>Mature Secondary Structure
MKLTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATISR
CCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHH
VMEAIENEHDIPRHIRARITVETYHSFFWRILKTHGYLLGLPRKLSILTPANEAIALSTI
HHHHHHCCCCCCCHHHHEEEHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHH
RREYKPASKLTDEERSQKKGRESKERLRLATEDGRVCFDLFASLVARLLSRSERLRKLVA
HHHHCCHHHCCCHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TRYPFIILDEFQDTNSDQWAVVQQLGRTSTLLALADPEQRIYDWIGADPERLNQFLGVFK
HCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHH
AQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEAAVALITTT
HCCCCCCCCCCCCCCCEEEEEECHHHHCCCHHCCCCCCCEEEECCCCCCCCCEEEEEEHH
YAARKRLVALKKADWSLAVLVPTKKMTRNVSDLFRQPPSKLTAISHTAAVELDAAILAAE
HHHHHHHHHEEECCCEEEEEECCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VVSYLMQPTTLFHLDGFIDLLCNFYQGKGGDAPAKGDLQEADNIRKAFAMSAQRKAAGKA
HHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LPANSIMVRLLKTYEQARVVALSGDPDADWRAIRQVLDASSCPRCKEVGLEVKNIRLLER
CCHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHH
GTQLRQELSEDWRTFGHYENALEITRQAFVREHFSTQASPPSGVFVMNMHKAKGKQFDEV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCCCEE
VIFEGWPRYYKKQIIGNPDRIIRGNAKENLDEQARQNLRVSITRGKLRTTILMPDADPCI
EEECCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCEEEEEEECCEEEEEECCCCCCEE
VFK
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]