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The map label for this gene is lptF [H]

Identifier: 120611822

GI number: 120611822

Start: 3492522

End: 3493619

Strand: Direct

Name: lptF [H]

Synonym: Aave_3163

Alternate gene names: 120611822

Gene position: 3492522-3493619 (Clockwise)

Preceding gene: 120611817

Following gene: 120611823

Centisome position: 65.25

GC content: 68.49

Gene sequence:

>1098_bases
ATGTTATTCGATTCATCCATTCGCAAGGAACTGGCCCGCAGCTTCGGCGCGACGCTGGTGGTGCTGGTCACCGTGGTCAT
GACCATGATGCTGATCCGCACGCTCGGTCAGGCGTCGCGCGGCAGCGTGAACCCCTCGGACGTGATGCTCGTGATGGGCT
TCACCGTGCTCGGCCAGTTGCCCACCATCCTCACCCTGAGCCTGTTCGTGGCCGTGGTCGGCACGCTGGCGCGCATGTAC
CGCGAAAGCGAGATGGTCATCTGGTTCGCGAGCGGGCGCGGCATGCTGCACCTGCTGCCGCCGCTGCTGCGCTTCGCATG
GCCGGTGATCCTGGCGATCGCCACGCTCGCCCTGCTGATCTGGCCCTGGGCCAACCAGCAGATCCAGCAGCTCAAGGTGC
AGTACGAGCAGCGCAGCGACGTGGACCGCATCGCCCCGGGCGAGTTCCAGGAGTCGGCCAACGGCGCGCGCGTGTTCTTC
ATCGACCGCGAGACGCCCGACAACCAGCAGGCCACCAACGTGTTCATCGCCTCGAATGAGCACGGCCGCGAGACGGTCAC
CTCCGCCCGCAGCGCGCGGCTGGAGACGCGCGGCAACCAGCGCATGGCCCTGTTGAGCGACGGGCAGCGCCTGGAAACCT
CCCTGGACAAGCCGGGACTGAAGGTGAGCGAGTTCTCCGAATACGGCACGCGGATCGGCGGCGCCGCCAGCAGTTCCTCC
GACGACGGCGCGGTCAAGACCCGCAGCACGGCGCAGTTGTTCGCCTCCAGCGACCCGGTGTTCCGCGCCGAACTCGGGTG
GCGCTTCGGCCTGGCGTTCGCGGCGCTCAACTTCGTCGTGCTGGGCCTGGCCGTCGCCAGCGCCAATCCGCGCGCCGCGC
GGAGCACCAGCCTGGTGTTCGCGCTTTTCGCCTTCGTGGTCTATTACAACCTCATGACCTTCGGACAGAACTGGGTGGGC
GCGGGCCGCATGGGCCTGGGCGCCTTCATGGCCGCCTTGCATGGCGGCACGCTGGTGCTGGGACTGCTGCTCCTCGCGGC
GCGCCACAACCGCTGGTCGCCCCGGCTGCCGTCCCTGCGCGTGCGGAGGCCCGCATGA

Upstream 100 bases:

>100_bases
GGCACCAGCACGGCGAGCAAATCGCATTTCTCGGCGGCGGCGGAGGCCAGGGACAGGGTCTTCAGATCGAAGTTCATAAT
CGGCGTTTTCCTTCGAGCCA

Downstream 100 bases:

>100_bases
AGACCATCCGCTGGCTCATCTACCGCGAGGCCCTGGCGGCCGTGGGCTTCGTCACGCTGGGCTTCCTGGCGCTGTTCTTC
TTCTTCGACATGGTGGACGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLPTILTLSLFVAVVGTLARMY
RESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIWPWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFF
IDRETPDNQQATNVFIASNEHGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS
DDGAVKTRSTAQLFASSDPVFRAELGWRFGLAFAALNFVVLGLAVASANPRAARSTSLVFALFAFVVYYNLMTFGQNWVG
AGRMGLGAFMAALHGGTLVLGLLLLAARHNRWSPRLPSLRVRRPA

Sequences:

>Translated_365_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLPTILTLSLFVAVVGTLARMY
RESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIWPWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFF
IDRETPDNQQATNVFIASNEHGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS
DDGAVKTRSTAQLFASSDPVFRAELGWRFGLAFAALNFVVLGLAVASANPRAARSTSLVFALFAFVVYYNLMTFGQNWVG
AGRMGLGAFMAALHGGTLVLGLLLLAARHNRWSPRLPSLRVRRPA
>Mature_365_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLPTILTLSLFVAVVGTLARMY
RESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIWPWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFF
IDRETPDNQQATNVFIASNEHGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS
DDGAVKTRSTAQLFASSDPVFRAELGWRFGLAFAALNFVVLGLAVASANPRAARSTSLVFALFAFVVYYNLMTFGQNWVG
AGRMGLGAFMAALHGGTLVLGLLLLAARHNRWSPRLPSLRVRRPA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=296, Percent_Identity=25, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39928; Mature: 39928

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQL
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
PTILTLSLFVAVVGTLARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLI
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WPWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIASNE
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCEEEEECCC
HGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS
CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
DDGAVKTRSTAQLFASSDPVFRAELGWRFGLAFAALNFVVLGLAVASANPRAARSTSLVF
CCCCEECCHHHHHHHCCCCCEEHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALFAFVVYYNLMTFGQNWVGAGRMGLGAFMAALHGGTLVLGLLLLAARHNRWSPRLPSLR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
VRRPA
CCCCC
>Mature Secondary Structure
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQL
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
PTILTLSLFVAVVGTLARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLI
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WPWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIASNE
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCEEEEECCC
HGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS
CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
DDGAVKTRSTAQLFASSDPVFRAELGWRFGLAFAALNFVVLGLAVASANPRAARSTSLVF
CCCCEECCHHHHHHHCCCCCEEHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALFAFVVYYNLMTFGQNWVGAGRMGLGAFMAALHGGTLVLGLLLLAARHNRWSPRLPSLR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
VRRPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]