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The map label for this gene is bphP [H]

Identifier: 120611641

GI number: 120611641

Start: 3269934

End: 3271637

Strand: Direct

Name: bphP [H]

Synonym: Aave_2978

Alternate gene names: 120611641

Gene position: 3269934-3271637 (Clockwise)

Preceding gene: 120611640

Following gene: 120611643

Centisome position: 61.09

GC content: 70.13

Gene sequence:

>1704_bases
ATGAATCTCCCGCTCCACACCGCGGCCCCCCCGGCGGCGACCCTCGACAATTGCGACCGCGAGCCGATCCACATTCCTGG
AAGCATCCAGGACCACGGCGCGCTCGTCGCTTTCGATGGCGATGGCGTCGTCCGCTATGCGAGCGCCAACGCGGAGGACC
TCCTGGGCTGCCCGCTGGTGCCGGGCAGCGTGCTCGAAGGGCTGCTGCCCCAGGCCCCGTGCTCGGCCGTGGCCGACAAG
GTGCGCGAAGGCCTGATGGCGCTGCGGGGGGAAGCCGAAGTCCCCATGCCCGCAGAACTGCAGGTGGGCAGCCGGCAATT
CGACGTGGTGCTGCACATCAGCGACAAGCTGCTCGTGGCCGAATTCGAGTCGCGCCGGCACAGCAGCGCGGAACTGGCCG
TGTTCGCGGTGCAGGCGCACCGGGCCATGGAAAAGCTGCGCAGGCCCCGCGCCATCGACGACCTGCTGCAGCTGGCCACG
GATGAGCTGCGCGCTCTGACCGGTTTCGACCGCGTGATGGCCTACCGCTTCCGGCCCGACGACAGCGGCGAAGTGGTCGC
CGAATCCTGCATTCCCACGCTGGACCCCTACCGGGGGCGGCGCTATCCGGCCAGCGACATCCCCGCCCAGGCCCGGCGCC
TGTACGTGGTCAACACCCTGCGCCTCATCGCCGACGTGGGCGCGCCCGTGGTGCCGCTGCTGCAGCGGGAGGCCGGGCCG
CTGGACTTGAGCGCCAGCATCCTGCGCAGCGTCTCGCCCATCCACATCGAGTACCTCTCCAACATGGGCGTGGCCGCCTC
GATGAGCGTGTCCATCGTCATCAACGGCCAGCTCTGGGGCCTGCTGGCCTGCCACCACATGCAGCCGCGCCAGGTGCCCT
ACAGCGTGCGCATGGCCTGCGACGTCATCGCGCAGGTGCTGTCGTCCAACATCCAGAGTTCCCTGCTGCGCGCCCAGACG
GAGCGCACGGAGGCCGCCGCCACCGTGCGCTCGCGCCTCATCGCGGACATCCTGCACTCCGACGACGAGTACGCTGCGCT
GGCCCGCCACGCGGCCGAACTCTGCACTGCCCTCCGCGCCGAGGCCGCCGTGGTGGCCACGGGCGCCAAACTGCAGCTTG
TCGGCGGCATCCAGGAAGAGGCCGCCCAGGCCATCCTGGAATGGCTCGGCTCCGGCCCGGACGACGTTTCCCCGGACCGC
CTGTTCCACACCCATGCCCTGCCCCGCCGCATGGAAGCCCTCGCGACACGGGCGGCGCCGTGGTGCGGCCTGCTGGCCCT
GCCCTTCGACCGCGAACGCGGAGGCTGGGCGCTCTTCCTGCGCCGCGAGCAGATCGAAACCATCCACTGGGGCGGCCGGC
CCGAAAAGGAAGTCCGTCCCGGCCCGCTGGGTCCGCGGCTCACGCCCCGGGGCTCTTTCGAGCTGTGGAAGGAAACCGTG
CGCGCCACGGCCGAGCCATGGGAAGGCGTGGAACTCGACATCGCCGGGCAGGTGCTGGACGAACTGCAGCGCGCACAGCA
TGCCCGGCATGCCGAACTCAACCGGGCCCGCACCCAGCTCATGGCGGTGCTAGGTGTTGAGTCTCACGAGGTTGTTCACA
CCCGGAATGCGTGTGATGGGAGGCTGATGGCCGAGCGCGGAGTGTGGCCGGCACCAGTTGTAGCCGTCAATGAAGGGCTG
CAGGGCAGCCGTGCGTTGGGCTGA

Upstream 100 bases:

>100_bases
TTCGATGCCTTGCAACGGCAATACGATCCGCTGGAAATGCCCGCATGACTGCTCCACGCCCTTGCGCCCCGACACGATAC
GGCTCGATGGAGCCCTTTCC

Downstream 100 bases:

>100_bases
GCTTTCGTAGGGTCTGGCATAGGCCCACTCCCGCAGGCTGGTCTGTACGAATCGCTCGGCCTTGCCGTTGGTCTTGGGCG
TATAGGGCCGCGTGCGGATG

Product: putative GAF sensor protein

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MNLPLHTAAPPAATLDNCDREPIHIPGSIQDHGALVAFDGDGVVRYASANAEDLLGCPLVPGSVLEGLLPQAPCSAVADK
VREGLMALRGEAEVPMPAELQVGSRQFDVVLHISDKLLVAEFESRRHSSAELAVFAVQAHRAMEKLRRPRAIDDLLQLAT
DELRALTGFDRVMAYRFRPDDSGEVVAESCIPTLDPYRGRRYPASDIPAQARRLYVVNTLRLIADVGAPVVPLLQREAGP
LDLSASILRSVSPIHIEYLSNMGVAASMSVSIVINGQLWGLLACHHMQPRQVPYSVRMACDVIAQVLSSNIQSSLLRAQT
ERTEAAATVRSRLIADILHSDDEYAALARHAAELCTALRAEAAVVATGAKLQLVGGIQEEAAQAILEWLGSGPDDVSPDR
LFHTHALPRRMEALATRAAPWCGLLALPFDRERGGWALFLRREQIETIHWGGRPEKEVRPGPLGPRLTPRGSFELWKETV
RATAEPWEGVELDIAGQVLDELQRAQHARHAELNRARTQLMAVLGVESHEVVHTRNACDGRLMAERGVWPAPVVAVNEGL
QGSRALG

Sequences:

>Translated_567_residues
MNLPLHTAAPPAATLDNCDREPIHIPGSIQDHGALVAFDGDGVVRYASANAEDLLGCPLVPGSVLEGLLPQAPCSAVADK
VREGLMALRGEAEVPMPAELQVGSRQFDVVLHISDKLLVAEFESRRHSSAELAVFAVQAHRAMEKLRRPRAIDDLLQLAT
DELRALTGFDRVMAYRFRPDDSGEVVAESCIPTLDPYRGRRYPASDIPAQARRLYVVNTLRLIADVGAPVVPLLQREAGP
LDLSASILRSVSPIHIEYLSNMGVAASMSVSIVINGQLWGLLACHHMQPRQVPYSVRMACDVIAQVLSSNIQSSLLRAQT
ERTEAAATVRSRLIADILHSDDEYAALARHAAELCTALRAEAAVVATGAKLQLVGGIQEEAAQAILEWLGSGPDDVSPDR
LFHTHALPRRMEALATRAAPWCGLLALPFDRERGGWALFLRREQIETIHWGGRPEKEVRPGPLGPRLTPRGSFELWKETV
RATAEPWEGVELDIAGQVLDELQRAQHARHAELNRARTQLMAVLGVESHEVVHTRNACDGRLMAERGVWPAPVVAVNEGL
QGSRALG
>Mature_567_residues
MNLPLHTAAPPAATLDNCDREPIHIPGSIQDHGALVAFDGDGVVRYASANAEDLLGCPLVPGSVLEGLLPQAPCSAVADK
VREGLMALRGEAEVPMPAELQVGSRQFDVVLHISDKLLVAEFESRRHSSAELAVFAVQAHRAMEKLRRPRAIDDLLQLAT
DELRALTGFDRVMAYRFRPDDSGEVVAESCIPTLDPYRGRRYPASDIPAQARRLYVVNTLRLIADVGAPVVPLLQREAGP
LDLSASILRSVSPIHIEYLSNMGVAASMSVSIVINGQLWGLLACHHMQPRQVPYSVRMACDVIAQVLSSNIQSSLLRAQT
ERTEAAATVRSRLIADILHSDDEYAALARHAAELCTALRAEAAVVATGAKLQLVGGIQEEAAQAILEWLGSGPDDVSPDR
LFHTHALPRRMEALATRAAPWCGLLALPFDRERGGWALFLRREQIETIHWGGRPEKEVRPGPLGPRLTPRGSFELWKETV
RATAEPWEGVELDIAGQVLDELQRAQHARHAELNRARTQLMAVLGVESHEVVHTRNACDGRLMAERGVWPAPVVAVNEGL
QGSRALG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 61727; Mature: 61727

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPLHTAAPPAATLDNCDREPIHIPGSIQDHGALVAFDGDGVVRYASANAEDLLGCPLV
CCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCEEEEECCCHHHHCCCCCC
PGSVLEGLLPQAPCSAVADKVREGLMALRGEAEVPMPAELQVGSRQFDVVLHISDKLLVA
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEEEECCCEEEH
EFESRRHSSAELAVFAVQAHRAMEKLRRPRAIDDLLQLATDELRALTGFDRVMAYRFRPD
HHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
DSGEVVAESCIPTLDPYRGRRYPASDIPAQARRLYVVNTLRLIADVGAPVVPLLQREAGP
CCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
LDLSASILRSVSPIHIEYLSNMGVAASMSVSIVINGQLWGLLACHHMQPRQVPYSVRMAC
CCHHHHHHHCCCCEEHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
DVIAQVLSSNIQSSLLRAQTERTEAAATVRSRLIADILHSDDEYAALARHAAELCTALRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EAAVVATGAKLQLVGGIQEEAAQAILEWLGSGPDDVSPDRLFHTHALPRRMEALATRAAP
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
WCGLLALPFDRERGGWALFLRREQIETIHWGGRPEKEVRPGPLGPRLTPRGSFELWKETV
CCCEEECCCCCCCCCEEEEEEHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RATAEPWEGVELDIAGQVLDELQRAQHARHAELNRARTQLMAVLGVESHEVVHTRNACDG
HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
RLMAERGVWPAPVVAVNEGLQGSRALG
CEEHHCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MNLPLHTAAPPAATLDNCDREPIHIPGSIQDHGALVAFDGDGVVRYASANAEDLLGCPLV
CCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCEEEEECCCHHHHCCCCCC
PGSVLEGLLPQAPCSAVADKVREGLMALRGEAEVPMPAELQVGSRQFDVVLHISDKLLVA
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEEEECCCEEEH
EFESRRHSSAELAVFAVQAHRAMEKLRRPRAIDDLLQLATDELRALTGFDRVMAYRFRPD
HHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
DSGEVVAESCIPTLDPYRGRRYPASDIPAQARRLYVVNTLRLIADVGAPVVPLLQREAGP
CCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
LDLSASILRSVSPIHIEYLSNMGVAASMSVSIVINGQLWGLLACHHMQPRQVPYSVRMAC
CCHHHHHHHCCCCEEHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
DVIAQVLSSNIQSSLLRAQTERTEAAATVRSRLIADILHSDDEYAALARHAAELCTALRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EAAVVATGAKLQLVGGIQEEAAQAILEWLGSGPDDVSPDRLFHTHALPRRMEALATRAAP
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
WCGLLALPFDRERGGWALFLRREQIETIHWGGRPEKEVRPGPLGPRLTPRGSFELWKETV
CCCEEECCCCCCCCCEEEEEEHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RATAEPWEGVELDIAGQVLDELQRAQHARHAELNRARTQLMAVLGVESHEVVHTRNACDG
HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
RLMAERGVWPAPVVAVNEGLQGSRALG
CEEHHCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]