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The map label for this gene is ydiU [C]

Identifier: 120611610

GI number: 120611610

Start: 3237643

End: 3239139

Strand: Direct

Name: ydiU [C]

Synonym: Aave_2947

Alternate gene names: 120611610

Gene position: 3237643-3239139 (Clockwise)

Preceding gene: 120611607

Following gene: 120611611

Centisome position: 60.49

GC content: 71.01

Gene sequence:

>1497_bases
ATGGCGGGAATGACGACCTCCGCCCCCTCCGCCCCGACGGCCGAGGCCCGCTCGGGCCTGACCTGGCGGGATGGTTTCGC
CGCCCTCGGGCCCGATTTCTTCACCGAACTGGTCCCTACGCCGCTGCCTGGTCCCCGGTGGGTGGCGGGCAGCGAGGCCA
CCGCCCGGCTCATCGGGCTGGAGCCGGACTGGCTGGGCAGCGATGCGGCCGTGCAGGTGCTGTCAGGCAATGCACTGCTG
CGCGGCATGCGCCCGCTGGCCAGCGTGTACAGCGGCCACCAGTTCGGCGTCTGGGCCGGGCAACTGGGCGACGGCCGCGC
CATCCTGCTCGGCGAGACCGACACCGGCTACGAAGTCCAGCTCAAAGGCAGCGGCCGCACCCCCTATTCGCGCATGGGCG
ACGGCCGCGCCGTGCTGCGTTCCTCCATCCGCGAGTTCCTCTGCAGCGAGGCCATGCACGCGCTCGGCATCCCCACCACG
CGCGCGCTGGCCCTGACGGCCTCGCCCGCGCCCGTGGTGCGCGAGGAGATCGAGACGGCTGCCGTCGTGACGCGCGTGGC
GCCCAGCTTCGTGCGGTTCGGCCACTTCGAGCACTTCGCGGCGCGCGACCAGGTGCGCGAACTGCGCGCCCTGGCGGACT
ACGTGATCGACCGCTACTACCCCGGCTGCCGCGATGCCGGCGGCGCTCCCGGCGCCAACCCCTACGCCGCGCTGCTGCAG
GCCGTGGGCGCCCGGACCGCTGCCCTGCTGGCGCAGTGGCAGGCCGTGGGTTTCTGCCACGGGGTGATGAACACCGACAA
CATGAGCATCCTCGGGCTCACCATCGACTACGGCCCCTTCCAGTTCCTCGATGCCTTCGTGCCGGGGCACATCTGCAACC
ACAGCGACAGCCAGGGCCGCTACGCCTTCAACCGCCAGCCCCAGGTCGCCTACTGGAACCTGTTCTGCCTGGGCCAGGCA
CTGATGCCGCTGATCGGCGACACGGAGCTCGCCCAGGCCGCGCTCGAACCCTACCGCACGGCCTTTCCCGCGGAGTACAT
GGCCCGCATGCGCGCCAAGCTCGGACTGGTGTCGGCCGCCGAAGGAGACGCCGCGCTGGTGGATGACCTGCTCGGACTGC
TGGCGGCTGACGCCGTGGACTACACCATCTTCTGGCACCGGCTCTCGCAGGCGGTGGCCAGCGGCGATTTCACGCCGGTG
CGCGACCTGTTCATCGACCGGGCCGGATGGGAAGCCTGGTCCGCGCGCTACCGGCAGCGCCTCGGGAGCGGGAGCGATCA
GGCCGCGGGTCTCATGGAGCGCACCAATCCCCGCTTCGTGCTGCGCAACCACCTGGGAGAGCAGACCATCCGGGCGGCGA
AGTCGGGGGATTTCGCGCCCCTGCACGCGCTGCAGGCCGTGCTGGCCCGGCCTTTCGACGAACATCCCGCGCATGCCGAG
TGGGCGGGCTTCCCGCCCGACTGGGCCTCTTCCATCGAAATCAGCTGTTCATCATGA

Upstream 100 bases:

>100_bases
CGTCCGGCGGCCCTTGTCGCCAGGTTGACAGGCGACGGGAAGGTGCCGGTTGTTGCACGCAAGCCCCTGTGGCCCGCCCA
GGCAAAGAGGGTGGGAGACA

Downstream 100 bases:

>100_bases
CCTACCCCATCCAGAAGACCGATGCCGAGTGGCAGGCACTGCTGCAGGACAAGGGCGCCGAACCCGCCGCCTGGCAGGTG
ACGCGGCACGCCGCCACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MAGMTTSAPSAPTAEARSGLTWRDGFAALGPDFFTELVPTPLPGPRWVAGSEATARLIGLEPDWLGSDAAVQVLSGNALL
RGMRPLASVYSGHQFGVWAGQLGDGRAILLGETDTGYEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTT
RALALTASPAPVVREEIETAAVVTRVAPSFVRFGHFEHFAARDQVRELRALADYVIDRYYPGCRDAGGAPGANPYAALLQ
AVGARTAALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFVPGHICNHSDSQGRYAFNRQPQVAYWNLFCLGQA
LMPLIGDTELAQAALEPYRTAFPAEYMARMRAKLGLVSAAEGDAALVDDLLGLLAADAVDYTIFWHRLSQAVASGDFTPV
RDLFIDRAGWEAWSARYRQRLGSGSDQAAGLMERTNPRFVLRNHLGEQTIRAAKSGDFAPLHALQAVLARPFDEHPAHAE
WAGFPPDWASSIEISCSS

Sequences:

>Translated_498_residues
MAGMTTSAPSAPTAEARSGLTWRDGFAALGPDFFTELVPTPLPGPRWVAGSEATARLIGLEPDWLGSDAAVQVLSGNALL
RGMRPLASVYSGHQFGVWAGQLGDGRAILLGETDTGYEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTT
RALALTASPAPVVREEIETAAVVTRVAPSFVRFGHFEHFAARDQVRELRALADYVIDRYYPGCRDAGGAPGANPYAALLQ
AVGARTAALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFVPGHICNHSDSQGRYAFNRQPQVAYWNLFCLGQA
LMPLIGDTELAQAALEPYRTAFPAEYMARMRAKLGLVSAAEGDAALVDDLLGLLAADAVDYTIFWHRLSQAVASGDFTPV
RDLFIDRAGWEAWSARYRQRLGSGSDQAAGLMERTNPRFVLRNHLGEQTIRAAKSGDFAPLHALQAVLARPFDEHPAHAE
WAGFPPDWASSIEISCSS
>Mature_497_residues
AGMTTSAPSAPTAEARSGLTWRDGFAALGPDFFTELVPTPLPGPRWVAGSEATARLIGLEPDWLGSDAAVQVLSGNALLR
GMRPLASVYSGHQFGVWAGQLGDGRAILLGETDTGYEVQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTR
ALALTASPAPVVREEIETAAVVTRVAPSFVRFGHFEHFAARDQVRELRALADYVIDRYYPGCRDAGGAPGANPYAALLQA
VGARTAALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFVPGHICNHSDSQGRYAFNRQPQVAYWNLFCLGQAL
MPLIGDTELAQAALEPYRTAFPAEYMARMRAKLGLVSAAEGDAALVDDLLGLLAADAVDYTIFWHRLSQAVASGDFTPVR
DLFIDRAGWEAWSARYRQRLGSGSDQAAGLMERTNPRFVLRNHLGEQTIRAAKSGDFAPLHALQAVLARPFDEHPAHAEW
AGFPPDWASSIEISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=382, Percent_Identity=49.2146596858639, Blast_Score=319, Evalue=5e-87,
Organism=Escherichia coli, GI1787999, Length=484, Percent_Identity=49.1735537190083, Blast_Score=435, Evalue=1e-123,
Organism=Saccharomyces cerevisiae, GI6325034, Length=410, Percent_Identity=34.6341463414634, Blast_Score=219, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 53697; Mature: 53566

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGMTTSAPSAPTAEARSGLTWRDGFAALGPDFFTELVPTPLPGPRWVAGSEATARLIGL
CCCCCCCCCCCCCHHHHCCCCCCCCCHHCCHHHHHHHCCCCCCCCCEECCCCCCEEEECC
EPDWLGSDAAVQVLSGNALLRGMRPLASVYSGHQFGVWAGQLGDGRAILLGETDTGYEVQ
CCCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCEEEE
LKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALALTASPAPVVREEIETA
EECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHH
AVVTRVAPSFVRFGHFEHFAARDQVRELRALADYVIDRYYPGCRDAGGAPGANPYAALLQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
AVGARTAALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFVPGHICNHSDSQGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCHHCCCCCCCCC
YAFNRQPQVAYWNLFCLGQALMPLIGDTELAQAALEPYRTAFPAEYMARMRAKLGLVSAA
EEECCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEECC
EGDAALVDDLLGLLAADAVDYTIFWHRLSQAVASGDFTPVRDLFIDRAGWEAWSARYRQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH
LGSGSDQAAGLMERTNPRFVLRNHLGEQTIRAAKSGDFAPLHALQAVLARPFDEHPAHAE
HCCCCCHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
WAGFPPDWASSIEISCSS
CCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
AGMTTSAPSAPTAEARSGLTWRDGFAALGPDFFTELVPTPLPGPRWVAGSEATARLIGL
CCCCCCCCCCCCHHHHCCCCCCCCCHHCCHHHHHHHCCCCCCCCCEECCCCCCEEEECC
EPDWLGSDAAVQVLSGNALLRGMRPLASVYSGHQFGVWAGQLGDGRAILLGETDTGYEVQ
CCCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCEEEE
LKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALALTASPAPVVREEIETA
EECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHH
AVVTRVAPSFVRFGHFEHFAARDQVRELRALADYVIDRYYPGCRDAGGAPGANPYAALLQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
AVGARTAALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFVPGHICNHSDSQGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCHHCCCCCCCCC
YAFNRQPQVAYWNLFCLGQALMPLIGDTELAQAALEPYRTAFPAEYMARMRAKLGLVSAA
EEECCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEECC
EGDAALVDDLLGLLAADAVDYTIFWHRLSQAVASGDFTPVRDLFIDRAGWEAWSARYRQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH
LGSGSDQAAGLMERTNPRFVLRNHLGEQTIRAAKSGDFAPLHALQAVLARPFDEHPAHAE
HCCCCCHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
WAGFPPDWASSIEISCSS
CCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA