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The map label for this gene is yddU [C]

Identifier: 120611589

GI number: 120611589

Start: 3214272

End: 3216503

Strand: Reverse

Name: yddU [C]

Synonym: Aave_2925

Alternate gene names: 120611589

Gene position: 3216503-3214272 (Counterclockwise)

Preceding gene: 120611590

Following gene: 120611570

Centisome position: 60.09

GC content: 70.16

Gene sequence:

>2232_bases
ATGGACGGCCCCGTCGCCGAGCCCGAATGCCAGCCCGCCGCCGCGCCGTGCGCGGACCCGGCGTGGCAGGTACTGGTGGT
GGACGGCGATCCTGGCGTGCACGGCGTGGTGCAGGACACGCTGGAAGGCGTGGAACTGCTGGGCCGCCCCCTGGGCTGCC
TCCATGCGTACACCCGTTCGCAGGCGCGTGCCATGCTGCTGGGCGCATCCGGCATCGCGGTGGTGCTGCTCGGCGCTGCT
GAGGACGGAGACGCCGGCGATGCCGAAATGCTGGATTTCATCCGCCACACCGCCGGCCTGGGCAATACCCGTATCGTGCT
GTGTACCGCGCAGGCGGGCCATGCGCCGGACGAGGACACGCTGCTGCGCTACGACATCAACGATTTCCGCGCGAAATCCG
AATGGGCGCAGGGGCGGCTATTGCCCGTGGTCCTCTCCGCCATCCGCTCCTACGAACAGCGCTGCTCCATCGACGCCAGC
CGCCGCAGCCTCGAACTCATCGTGCGTTCCAGCGCGGCGCTGCTGGAGGAGCCCGATCTGCAGGCTTTCGCAACCGGCGT
ACTGACCCAGCTCGGCGCCTTGCTGGACGGCGGGGCGCGGGGCATGGCATGTATGCTGCACGGTGCCGCAGCCGACAGCT
GCCGGGTAGTGGCGGCGACGGGCCGGTTCGCCGGATGCATCGGCCGGGATATCGATGCGCTGCCCGACGTCCGCTGCCGG
CAATTGCTGGCCCGGGCGCTCAAGTTCAGCCACAACGTCCATGGGGAAGAGGGCGGCATCGCGCTGTACTTCGGCAACCG
GAGCGAGCGCGGCATGGCCGTCTTCGTGGACACGCCGCATCCCCACAACGCACTGGATCGCCAACTGCTGGATGTCTTTT
CCATCAACATGCGGACCCTGCTGCTCAACCGGGACCTGCTGGACCGGCTGCGCCGCTTCGCCTACTACGACCCGCTGGTC
CGCCTGCCCAACCGCGCGCATTTCGTCGAGAAGGTGGACGACTGCGTGCGGCGCGGCGGCGCGCAGGACCATGTCCTGGC
GCTGATCGACATCGACGACTTCAGCGCGGCGAACGACGTGATGGGCCATGCCTTCGGCGACCGGCTGCTGGAGGCCGTGG
CCCGCCGCCTGGCCGACGCGCTGCCCTCCGGCGTGCTGCTGGCGCGCGTGGGCTCGGACACCTTCGGCGTGCTCGGCGAA
GCCCGCCAGGTGGCGTTGCCGCAATTGCTGCAGTGCGTGCGGCCGCCGCCGGTCGTGGACGGCGTGCCGCAGAAAGTGTC
GCTCACCTGCGGCTACGTCCACTTGCCCTCGGATGCCCAGAAGGGCGCGGACCTCGTCAAGGATGCGACCATCGCCCTCA
AGCGGGCCAAACGGGACCACCGCGGCCAGCACCTGCAGTACCTCGAACACATGGGCCGGGAGGCCCGCGACCGCGCGATG
CTGCTGTCCGACCTGCGCGCGGCGATCGACGATGCCCAGCTGTTCCTGGTCTATCAGCCGCAACTGCATCTGGGCACCGG
CGCCCTCGTGGGCATGGAGGCCCTGCTGCGCTGGCGCCTGCCCGACGGGCGGTTCGTCTCCCCGGATGACTTCATTCCGA
TCGCGGAGCACTCGGGCCTCATCGCGCCGCTCGGACAATGGGTGCTCTCCACGGCCTGCCAGACCCTGTGTGCCCTGGCC
CGCGAAGGCCTGGCGCCGCCGCGCATTTCCGTGAACGTGTCGGTGGTCCAGTTGCAGGATCCCGCGTTCCCGGATGCGGT
GCGGGCGGCGCTGGCGGCCAGCGGTCTGCGCGGCAGCCAGCTGGAGCTGGAAATCACGGAGTCCGTCGCTGTGGTGCCCA
CCCAGTTGCTGCAGTCCACGCTGGCCTCGCTGCGCGCCGACGGCGTCAGCATCGCCATCGACGACTTCGGCACCGGCTAC
TCGTCCCTGAGCTACCTGGAGCGCCTGCCCCTGGACCGCATCAAGATCGACCGCAGCTTCGTGCGCCGCCCCACCGGAGC
GCAGGGCGCGCGCATCGCCGAGATGATCCTGAGGCTCGGGCACCAGTTGGGCCTGCGCGTGATGGCCGAGGGCATCGAGG
ACGCCGCCACGTGGGACGCGCTGCTGCGCATGGGATGCGACGAAGGGCAGGGCTACCATATCGCCGTACCCATGGACCTG
CGGCAGCTGCGGGCCTGGCTGGCGGCACGGCCCGCCGCGCAGCGTCAGTTCGGGCGCAATGGCGGCAGGTAG

Upstream 100 bases:

>100_bases
CCGACGAGGCGCTCTACGGTGCCAAGCGCGCGGGTCGCAATCGCGTGGTGCGCGCGGCCCCGGCGGCGCACGCGCCGAAT
CCATGAGCATCCAGGTCGGG

Downstream 100 bases:

>100_bases
GTCGCCAGGCGTTCCTTGAAGAAGGGCTGCACCGCCGCGATGTTGCCCTTGACCGCGATGGTGTCCGCGCCGGTGTCCCG
GCTCATGCCCAGCGGGTCTC

Product: diguanylate cyclase/phosphodiesterase / diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MDGPVAEPECQPAAAPCADPAWQVLVVDGDPGVHGVVQDTLEGVELLGRPLGCLHAYTRSQARAMLLGASGIAVVLLGAA
EDGDAGDAEMLDFIRHTAGLGNTRIVLCTAQAGHAPDEDTLLRYDINDFRAKSEWAQGRLLPVVLSAIRSYEQRCSIDAS
RRSLELIVRSSAALLEEPDLQAFATGVLTQLGALLDGGARGMACMLHGAAADSCRVVAATGRFAGCIGRDIDALPDVRCR
QLLARALKFSHNVHGEEGGIALYFGNRSERGMAVFVDTPHPHNALDRQLLDVFSINMRTLLLNRDLLDRLRRFAYYDPLV
RLPNRAHFVEKVDDCVRRGGAQDHVLALIDIDDFSAANDVMGHAFGDRLLEAVARRLADALPSGVLLARVGSDTFGVLGE
ARQVALPQLLQCVRPPPVVDGVPQKVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAM
LLSDLRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGLIAPLGQWVLSTACQTLCALA
REGLAPPRISVNVSVVQLQDPAFPDAVRAALAASGLRGSQLELEITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGY
SSLSYLERLPLDRIKIDRSFVRRPTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDL
RQLRAWLAARPAAQRQFGRNGGR

Sequences:

>Translated_743_residues
MDGPVAEPECQPAAAPCADPAWQVLVVDGDPGVHGVVQDTLEGVELLGRPLGCLHAYTRSQARAMLLGASGIAVVLLGAA
EDGDAGDAEMLDFIRHTAGLGNTRIVLCTAQAGHAPDEDTLLRYDINDFRAKSEWAQGRLLPVVLSAIRSYEQRCSIDAS
RRSLELIVRSSAALLEEPDLQAFATGVLTQLGALLDGGARGMACMLHGAAADSCRVVAATGRFAGCIGRDIDALPDVRCR
QLLARALKFSHNVHGEEGGIALYFGNRSERGMAVFVDTPHPHNALDRQLLDVFSINMRTLLLNRDLLDRLRRFAYYDPLV
RLPNRAHFVEKVDDCVRRGGAQDHVLALIDIDDFSAANDVMGHAFGDRLLEAVARRLADALPSGVLLARVGSDTFGVLGE
ARQVALPQLLQCVRPPPVVDGVPQKVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAM
LLSDLRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGLIAPLGQWVLSTACQTLCALA
REGLAPPRISVNVSVVQLQDPAFPDAVRAALAASGLRGSQLELEITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGY
SSLSYLERLPLDRIKIDRSFVRRPTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDL
RQLRAWLAARPAAQRQFGRNGGR
>Mature_743_residues
MDGPVAEPECQPAAAPCADPAWQVLVVDGDPGVHGVVQDTLEGVELLGRPLGCLHAYTRSQARAMLLGASGIAVVLLGAA
EDGDAGDAEMLDFIRHTAGLGNTRIVLCTAQAGHAPDEDTLLRYDINDFRAKSEWAQGRLLPVVLSAIRSYEQRCSIDAS
RRSLELIVRSSAALLEEPDLQAFATGVLTQLGALLDGGARGMACMLHGAAADSCRVVAATGRFAGCIGRDIDALPDVRCR
QLLARALKFSHNVHGEEGGIALYFGNRSERGMAVFVDTPHPHNALDRQLLDVFSINMRTLLLNRDLLDRLRRFAYYDPLV
RLPNRAHFVEKVDDCVRRGGAQDHVLALIDIDDFSAANDVMGHAFGDRLLEAVARRLADALPSGVLLARVGSDTFGVLGE
ARQVALPQLLQCVRPPPVVDGVPQKVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAM
LLSDLRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGLIAPLGQWVLSTACQTLCALA
REGLAPPRISVNVSVVQLQDPAFPDAVRAALAASGLRGSQLELEITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGY
SSLSYLERLPLDRIKIDRSFVRRPTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDL
RQLRAWLAARPAAQRQFGRNGGR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=32.3185011709602, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=32.2429906542056, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=35.4581673306773, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI226510982, Length=445, Percent_Identity=29.438202247191, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=32.5757575757576, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1788849, Length=489, Percent_Identity=26.5848670756646, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=33.2, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=34.2105263157895, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=32.6530612244898, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=34.5528455284553, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=31.0344827586207, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI87082096, Length=255, Percent_Identity=29.8039215686275, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1788381, Length=204, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 80281; Mature: 80281

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGPVAEPECQPAAAPCADPAWQVLVVDGDPGVHGVVQDTLEGVELLGRPLGCLHAYTRS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
QARAMLLGASGIAVVLLGAAEDGDAGDAEMLDFIRHTAGLGNTRIVLCTAQAGHAPDEDT
HHHEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
LLRYDINDFRAKSEWAQGRLLPVVLSAIRSYEQRCSIDASRRSLELIVRSSAALLEEPDL
EEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
QAFATGVLTQLGALLDGGARGMACMLHGAAADSCRVVAATGRFAGCIGRDIDALPDVRCR
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCHHHH
QLLARALKFSHNVHGEEGGIALYFGNRSERGMAVFVDTPHPHNALDRQLLDVFSINMRTL
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LLNRDLLDRLRRFAYYDPLVRLPNRAHFVEKVDDCVRRGGAQDHVLALIDIDDFSAANDV
HHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
MGHAFGDRLLEAVARRLADALPSGVLLARVGSDTFGVLGEARQVALPQLLQCVRPPPVVD
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GVPQKVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAM
CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHH
LLSDLRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGL
HHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHCCCCCCEECCCCCEECCCCCCC
IAPLGQWVLSTACQTLCALAREGLAPPRISVNVSVVQLQDPAFPDAVRAALAASGLRGSQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCE
LELEITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGYSSLSYLERLPLDRIKIDRSF
EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHH
VRRPTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
RQLRAWLAARPAAQRQFGRNGGR
HHHHHHHHHCCHHHHHHCCCCCC
>Mature Secondary Structure
MDGPVAEPECQPAAAPCADPAWQVLVVDGDPGVHGVVQDTLEGVELLGRPLGCLHAYTRS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
QARAMLLGASGIAVVLLGAAEDGDAGDAEMLDFIRHTAGLGNTRIVLCTAQAGHAPDEDT
HHHEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
LLRYDINDFRAKSEWAQGRLLPVVLSAIRSYEQRCSIDASRRSLELIVRSSAALLEEPDL
EEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
QAFATGVLTQLGALLDGGARGMACMLHGAAADSCRVVAATGRFAGCIGRDIDALPDVRCR
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCHHHH
QLLARALKFSHNVHGEEGGIALYFGNRSERGMAVFVDTPHPHNALDRQLLDVFSINMRTL
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LLNRDLLDRLRRFAYYDPLVRLPNRAHFVEKVDDCVRRGGAQDHVLALIDIDDFSAANDV
HHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
MGHAFGDRLLEAVARRLADALPSGVLLARVGSDTFGVLGEARQVALPQLLQCVRPPPVVD
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GVPQKVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAM
CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHH
LLSDLRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGL
HHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHCCCCCCEECCCCCEECCCCCCC
IAPLGQWVLSTACQTLCALAREGLAPPRISVNVSVVQLQDPAFPDAVRAALAASGLRGSQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCE
LELEITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGYSSLSYLERLPLDRIKIDRSF
EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHH
VRRPTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
RQLRAWLAARPAAQRQFGRNGGR
HHHHHHHHHCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]