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The map label for this gene is ihfA [H]

Identifier: 120611517

GI number: 120611517

Start: 3144057

End: 3144425

Strand: Reverse

Name: ihfA [H]

Synonym: Aave_2853

Alternate gene names: 120611517

Gene position: 3144425-3144057 (Counterclockwise)

Preceding gene: 120611518

Following gene: 120611516

Centisome position: 58.74

GC content: 63.14

Gene sequence:

>369_bases
GTGATGACCTTGACCCACACTTCCAAAGGCTCGGACATGATGGAGCTGGCCGTGGAGAGCCTGGAGACGCCTGCGCTGAC
CAAGGCGCAGCTCGCGGAACTGCTGTTCGACCAGATCGGCCTGAACAAGCGCGAGTCCAAGGACATGATCGATGCGTTCT
TCGACCTGATCGCGCAGCGCCTGGTGGACGGGCAGGACGTCAAGATTTCCGGTTTCGGGAATTTCCAGATCCGCACCAAG
GCACCACGCCCGGGGCGCAACCCTCGCACGGGGGAAGCCATTCCGATCCAGGCACGCCGGGTGGTCACCTTCCACGCCAG
CACCAAGCTGAAGGAACAGATCCAGAGCGGCGGGTCGTCCGCTGCCTGA

Upstream 100 bases:

>100_bases
CGCTGGGCGACGGCGTGACGGCGCTCACCGATGCGGAGATCGACGAATCGCTCCAGGCAGTGTTGCGGCAGCTGGAGCAG
CAATTGGGGGCGCGACTGCG

Downstream 100 bases:

>100_bases
CGAGGGCGGGGACGGGGCACGTGGCACCTTTCGGCCGGCACTTGCCCGAGCCGCTGGCGCGTTCCCCGGCCCTGCAGTAC
CCTTCCCGCCGTCCGCCTTT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MMTLTHTSKGSDMMELAVESLETPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTK
APRPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSSAA

Sequences:

>Translated_122_residues
MMTLTHTSKGSDMMELAVESLETPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTK
APRPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSSAA
>Mature_122_residues
MMTLTHTSKGSDMMELAVESLETPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTK
APRPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSSAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=55.4347826086957, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=32.2222222222222, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13375; Mature: 13375

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTLTHTSKGSDMMELAVESLETPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQR
CEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LVDGQDVKISGFGNFQIRTKAPRPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSS
HCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCC
AA
CC
>Mature Secondary Structure
MMTLTHTSKGSDMMELAVESLETPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQR
CEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LVDGQDVKISGFGNFQIRTKAPRPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSS
HCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA