Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is nodI [H]

Identifier: 120611447

GI number: 120611447

Start: 3055950

End: 3056684

Strand: Reverse

Name: nodI [H]

Synonym: Aave_2783

Alternate gene names: 120611447

Gene position: 3056684-3055950 (Counterclockwise)

Preceding gene: 120611449

Following gene: 120611445

Centisome position: 57.1

GC content: 63.4

Gene sequence:

>735_bases
ATGACGATACGTCCTATTGTGTTGCGCGGACTCGGAAAGCGCTATGGAAACCACGTTGCCGTCCACGGTCTCGACCTGGA
GGTCGATAGCGGCAGGTGCCTTGGACTGATCGGCCACAACGGCGCCGGGAAGACCACATCATTGTGCATGCTGGCGGGCC
TGGTCGTGCCTACCTGCGGTACGGCAACGATCCTGGGAAAGAATATCGCGAAGCGGCCGAAGGACGTCCTGGCGAGAATC
AATTTCATGTCCGCGTACATGGACCTGCCTGGCGGGCTGAAAGTCCGGGAGCTGCTGCTGCTCTTCGCGCGCCTGTACGG
TCTGGATCGCGTCCGGGAGCGGGTGGAGCAAAGCATGAACGACTTCGGGATCGATCCGTCGCTCGGGGGCCGGTTCGTCA
ACACGCTGTCGGCCGGTCAACGGGCCAAGGTACTGCTTGCCAAGGGATTCGTGAACGCTCCACAGGTGGTGCTGCTGGAC
GAGCCCACCGCGGCGCTGGATCCGGTAAGTGCCAGATCCGTACGGGCGTCCATCGCCAACGCCAAGCGGATCGGCGGCAC
CACGATCGTGCTGGCCTCGCACAACATGCGCGACATCGGCGAGCTGTGCGACGAAGTGCTGTTCATCGCGCGAGGCCGCG
TCGTCGCTTATGGCGCGCCCGAGGTGCTCAGGCAGCAATACCACTGCGCGGACCTGGACGAGCTCTACATAAGGCTGTCT
GCCTCTGCGGCCTAG

Upstream 100 bases:

>100_bases
CCGGTCTGCCACGGGCAGGCTCTGCAGCCGGGCAAAGACGGTGCGGCCGTGCTGCGCCATGTGTGATGCGGTGCCATCGA
AGCAAAGTCCATTGGAAACC

Downstream 100 bases:

>100_bases
CCGGCGCCGATGGCGCGGGAGCCGCCCGTCGCAGCGGAGCCCGATGGAAAAGGCCTGGCGCGGCGAGCCGTAGCCGTACT
GCCCGCGGGCCGGCGTCACC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Nodulation ATP-binding protein I [H]

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTIRPIVLRGLGKRYGNHVAVHGLDLEVDSGRCLGLIGHNGAGKTTSLCMLAGLVVPTCGTATILGKNIAKRPKDVLARI
NFMSAYMDLPGGLKVRELLLLFARLYGLDRVRERVEQSMNDFGIDPSLGGRFVNTLSAGQRAKVLLAKGFVNAPQVVLLD
EPTAALDPVSARSVRASIANAKRIGGTTIVLASHNMRDIGELCDEVLFIARGRVVAYGAPEVLRQQYHCADLDELYIRLS
ASAA

Sequences:

>Translated_244_residues
MTIRPIVLRGLGKRYGNHVAVHGLDLEVDSGRCLGLIGHNGAGKTTSLCMLAGLVVPTCGTATILGKNIAKRPKDVLARI
NFMSAYMDLPGGLKVRELLLLFARLYGLDRVRERVEQSMNDFGIDPSLGGRFVNTLSAGQRAKVLLAKGFVNAPQVVLLD
EPTAALDPVSARSVRASIANAKRIGGTTIVLASHNMRDIGELCDEVLFIARGRVVAYGAPEVLRQQYHCADLDELYIRLS
ASAA
>Mature_243_residues
TIRPIVLRGLGKRYGNHVAVHGLDLEVDSGRCLGLIGHNGAGKTTSLCMLAGLVVPTCGTATILGKNIAKRPKDVLARIN
FMSAYMDLPGGLKVRELLLLFARLYGLDRVRERVEQSMNDFGIDPSLGGRFVNTLSAGQRAKVLLAKGFVNAPQVVLLDE
PTAALDPVSARSVRASIANAKRIGGTTIVLASHNMRDIGELCDEVLFIARGRVVAYGAPEVLRQQYHCADLDELYIRLSA
SAA

Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=215, Percent_Identity=36.2790697674419, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI116734710, Length=228, Percent_Identity=32.0175438596491, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI27881501, Length=226, Percent_Identity=31.4159292035398, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI30795238, Length=226, Percent_Identity=31.4159292035398, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=32.0754716981132, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=32.0754716981132, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI150417984, Length=227, Percent_Identity=33.920704845815, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=31.9047619047619, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=32.3008849557522, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI27477115, Length=237, Percent_Identity=29.957805907173, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=29.3333333333333, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI27436953, Length=230, Percent_Identity=28.695652173913, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI6005701, Length=239, Percent_Identity=28.4518828451883, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI27262624, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI27262626, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI9961252, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9961250, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4505771, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI89111135, Length=239, Percent_Identity=24.2677824267782, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI21536378, Length=224, Percent_Identity=25.8928571428571, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI148612853, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=32.1428571428571, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI48994943, Length=238, Percent_Identity=30.2521008403361, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=29.8165137614679, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789593, Length=233, Percent_Identity=28.755364806867, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=27.9475982532751, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=29.0748898678414, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=31.9148936170213, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786803, Length=216, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790544, Length=250, Percent_Identity=27.2, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787758, Length=223, Percent_Identity=31.8385650224215, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789864, Length=234, Percent_Identity=28.2051282051282, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786319, Length=218, Percent_Identity=27.9816513761468, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=31.25, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=28.436018957346, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=27.1493212669683, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=30, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=27.0386266094421, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=205, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789962, Length=213, Percent_Identity=28.169014084507, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=28.7128712871287, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788761, Length=233, Percent_Identity=27.0386266094421, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788506, Length=221, Percent_Identity=25.3393665158371, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=28.110599078341, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790190, Length=219, Percent_Identity=31.0502283105023, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787712, Length=212, Percent_Identity=27.3584905660377, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=25.6302521008403, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788472, Length=227, Percent_Identity=28.1938325991189, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081834, Length=185, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=26.9607843137255, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=29.0178571428571, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789032, Length=216, Percent_Identity=24.0740740740741, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082268, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787547, Length=212, Percent_Identity=25.4716981132075, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=27.1929824561404, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787759, Length=221, Percent_Identity=26.2443438914027, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=25.1162790697674, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788897, Length=200, Percent_Identity=30, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082267, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786654, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786975, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=25.8536585365854, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI2367384, Length=171, Percent_Identity=29.8245614035088, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=26.8181818181818, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=222, Percent_Identity=31.5315315315315, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17565586, Length=224, Percent_Identity=32.5892857142857, Blast_Score=115, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71983523, Length=229, Percent_Identity=34.4978165938865, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71983516, Length=229, Percent_Identity=34.4978165938865, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71983510, Length=229, Percent_Identity=34.4978165938865, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI115533608, Length=228, Percent_Identity=29.3859649122807, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17511077, Length=222, Percent_Identity=29.2792792792793, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17567265, Length=210, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI133930907, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=26.027397260274, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=214, Percent_Identity=28.5046728971963, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=238, Percent_Identity=26.890756302521, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=242, Percent_Identity=26.8595041322314, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322957, Length=263, Percent_Identity=27.3764258555133, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=226, Percent_Identity=31.4159292035398, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI28573571, Length=226, Percent_Identity=31.4159292035398, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24650855, Length=236, Percent_Identity=27.1186440677966, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24650853, Length=236, Percent_Identity=27.1186440677966, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24643674, Length=229, Percent_Identity=28.82096069869, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281362751, Length=236, Percent_Identity=27.1186440677966, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI85725262, Length=244, Percent_Identity=28.6885245901639, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=31.4814814814815, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=31.4814814814815, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=31.5555555555556, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24666092, Length=228, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=29.1079812206573, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=29.1079812206573, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=26.5765765765766, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571209, Length=233, Percent_Identity=27.0386266094421, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24582014, Length=232, Percent_Identity=22.8448275862069, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24582012, Length=232, Percent_Identity=22.8448275862069, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI17136592, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85726357, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015851
- InterPro:   IPR005978
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26219; Mature: 26088

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTIRPIVLRGLGKRYGNHVAVHGLDLEVDSGRCLGLIGHNGAGKTTSLCMLAGLVVPTCG
CCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
TATILGKNIAKRPKDVLARINFMSAYMDLPGGLKVRELLLLFARLYGLDRVRERVEQSMN
CHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
DFGIDPSLGGRFVNTLSAGQRAKVLLAKGFVNAPQVVLLDEPTAALDPVSARSVRASIAN
HCCCCCCCCCHHHHHHCCCCHHEEEEECCCCCCCEEEEEECCCHHCCCCHHHHHHHHHHH
AKRIGGTTIVLASHNMRDIGELCDEVLFIARGRVVAYGAPEVLRQQYHCADLDELYIRLS
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHHEEEE
ASAA
CCCC
>Mature Secondary Structure 
TIRPIVLRGLGKRYGNHVAVHGLDLEVDSGRCLGLIGHNGAGKTTSLCMLAGLVVPTCG
CCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
TATILGKNIAKRPKDVLARINFMSAYMDLPGGLKVRELLLLFARLYGLDRVRERVEQSMN
CHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
DFGIDPSLGGRFVNTLSAGQRAKVLLAKGFVNAPQVVLLDEPTAALDPVSARSVRASIAN
HCCCCCCCCCHHHHHHCCCCHHEEEEECCCCCCCEEEEEECCCHHCCCCHHHHHHHHHHH
AKRIGGTTIVLASHNMRDIGELCDEVLFIARGRVVAYGAPEVLRQQYHCADLDELYIRLS
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHHEEEE
ASAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA