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The map label for this gene is xerD [H]

Identifier: 120611395

GI number: 120611395

Start: 2997071

End: 2998129

Strand: Direct

Name: xerD [H]

Synonym: Aave_2731

Alternate gene names: 120611395

Gene position: 2997071-2998129 (Clockwise)

Preceding gene: 120611379

Following gene: 120611399

Centisome position: 55.99

GC content: 60.06

Gene sequence:

>1059_bases
ATGGCAACGCCGTGGTGCCGGCCTGTCGCAGAGGTGTTTATGGATGGTGGAATGCGCGAGCCGGGCATCGAGACCCATGG
CCGCGGGGAAGGGTGGGACCCTCGATTCGACGACCTGCTCATGCAGGCCGCAGCCGAAGAGGGTCTGGCGGACGACTCGC
TGCGTGCCCTGCAGATCCAGTTGCGCTGCTTCAATGCATGGGTTCTGGCCAGAGAAGGGCGCTCGTGGGATCGTGCAACT
GCGGATGACCTGAAGGCCTATTTCCAGGAGGCTCGCGAACTGAGATCTGCGGCCACGGTGCGCTTGAAGCGGTGGGTGGT
CCAACGCCTCTATCGCTGGGCCCGGAGCGAAGGGATCATCGACGTATCCTTCGAGTCGGCGCTCATCGCAGTTCGCGCTA
CACCGCCGATGCGCCTGACCACCGTGCCGTCCGTAGACCAGATGCAACGCATCTTGTCTTTGCCGGATACCGGCACCCCC
AATGGTGTGCGGGATCGGGCTGCACTGGAACTTCTCTATGGCGCTGGATTGCGCTCCGCTGAGCTTTTGGGCCTGCACGT
CGCCCAGGTGCCCGACGCGCCGGGCATGCGCTTGATGGGGAAGGGTGCGAAGGAAAGGCTGGTGATCCTCGGAGAACACG
CACGCTATTGGATTGCACAATACAAAGCCGTGCGCCGGACACTGCTTGGATCGGGAGGGCACCGTGCCACGGCAACAAAC
CGGCTGTTCGTAAGTACCGGGATCCATCCGGACTATCAATATTCCCAGCTACGAAGAATGGTGGGCCGATATGCGGCCAT
GGTCGGCCTGAGCCTCACGCCGCACTCACTTCGGCATGCCTTTGCATCGCATCTCTACCAACACAAAGCACCCCTCAAGA
CCATCCAACTCTTACTCGGTCACGAGCATCTCGCCACCACGACTATTTATGTGTCAAGGCACTTTGAAGATGATCATAAA
TTACTGGACCAGCATCATCCGAGAGGTGGCCAGCACATGCGCTTCGCTCGATGGAAAGAGTCCAAGTCGAGGCCTGGTGC
AATTTTTCGAGGACCTTAG

Upstream 100 bases:

>100_bases
ATCGAAAAGCGTCGGTTTCAGAGAACACGGTTTCCGCTTGACTGCGGAGTTTTTATTTGATCTACATTTAACGAGTCGAG
GGGTGCGTCTCGCCGACGCC

Downstream 100 bases:

>100_bases
CCCACGTTGTCCAAGGAGTATCCGGCGGTTGGAGGATTTGTTGTACCCTTGTCGTCCGGCTTCGATTTGTCCGTGCTGCG
TCGACGATGAATCGAAATGT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MATPWCRPVAEVFMDGGMREPGIETHGRGEGWDPRFDDLLMQAAAEEGLADDSLRALQIQLRCFNAWVLAREGRSWDRAT
ADDLKAYFQEARELRSAATVRLKRWVVQRLYRWARSEGIIDVSFESALIAVRATPPMRLTTVPSVDQMQRILSLPDTGTP
NGVRDRAALELLYGAGLRSAELLGLHVAQVPDAPGMRLMGKGAKERLVILGEHARYWIAQYKAVRRTLLGSGGHRATATN
RLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHK
LLDQHHPRGGQHMRFARWKESKSRPGAIFRGP

Sequences:

>Translated_352_residues
MATPWCRPVAEVFMDGGMREPGIETHGRGEGWDPRFDDLLMQAAAEEGLADDSLRALQIQLRCFNAWVLAREGRSWDRAT
ADDLKAYFQEARELRSAATVRLKRWVVQRLYRWARSEGIIDVSFESALIAVRATPPMRLTTVPSVDQMQRILSLPDTGTP
NGVRDRAALELLYGAGLRSAELLGLHVAQVPDAPGMRLMGKGAKERLVILGEHARYWIAQYKAVRRTLLGSGGHRATATN
RLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHK
LLDQHHPRGGQHMRFARWKESKSRPGAIFRGP
>Mature_351_residues
ATPWCRPVAEVFMDGGMREPGIETHGRGEGWDPRFDDLLMQAAAEEGLADDSLRALQIQLRCFNAWVLAREGRSWDRATA
DDLKAYFQEARELRSAATVRLKRWVVQRLYRWARSEGIIDVSFESALIAVRATPPMRLTTVPSVDQMQRILSLPDTGTPN
GVRDRAALELLYGAGLRSAELLGLHVAQVPDAPGMRLMGKGAKERLVILGEHARYWIAQYKAVRRTLLGSGGHRATATNR
LFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKL
LDQHHPRGGQHMRFARWKESKSRPGAIFRGP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=308, Percent_Identity=35.3896103896104, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=30, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39721; Mature: 39590

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPWCRPVAEVFMDGGMREPGIETHGRGEGWDPRFDDLLMQAAAEEGLADDSLRALQIQ
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LRCFNAWVLAREGRSWDRATADDLKAYFQEARELRSAATVRLKRWVVQRLYRWARSEGII
HHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
DVSFESALIAVRATPPMRLTTVPSVDQMQRILSLPDTGTPNGVRDRAALELLYGAGLRSA
EEEECCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCH
ELLGLHVAQVPDAPGMRLMGKGAKERLVILGEHARYWIAQYKAVRRTLLGSGGHRATATN
HHHHHHHHCCCCCCCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPHSLRHAFASHLYQHKAPLKTIQLLLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHC
HEHLATTTIYVSRHFEDDHKLLDQHHPRGGQHMRFARWKESKSRPGAIFRGP
CHHHHEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ATPWCRPVAEVFMDGGMREPGIETHGRGEGWDPRFDDLLMQAAAEEGLADDSLRALQIQ
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LRCFNAWVLAREGRSWDRATADDLKAYFQEARELRSAATVRLKRWVVQRLYRWARSEGII
HHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
DVSFESALIAVRATPPMRLTTVPSVDQMQRILSLPDTGTPNGVRDRAALELLYGAGLRSA
EEEECCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCH
ELLGLHVAQVPDAPGMRLMGKGAKERLVILGEHARYWIAQYKAVRRTLLGSGGHRATATN
HHHHHHHHCCCCCCCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPHSLRHAFASHLYQHKAPLKTIQLLLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHC
HEHLATTTIYVSRHFEDDHKLLDQHHPRGGQHMRFARWKESKSRPGAIFRGP
CHHHHEEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]