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The map label for this gene is flhD [H]

Identifier: 120610686

GI number: 120610686

Start: 2181819

End: 2182148

Strand: Reverse

Name: flhD [H]

Synonym: Aave_2006

Alternate gene names: 120610686

Gene position: 2182148-2181819 (Counterclockwise)

Preceding gene: 120610687

Following gene: 120610685

Centisome position: 40.77

GC content: 62.73

Gene sequence:

>330_bases
ATGACCTCGGAACAACTTCTCGCTGAAATCCGCGAAGCCAACCTCACCTACCTGATGCTGGCCCAGACGCTGATCCGCCA
GGACAAGGCCGAAGCCGTGTTCCGCCTGGGCATCAACGAAGACGCCGCGGACATCCTGGCCTCCCTCTCGGCGGCCCAGG
TGCTCAAGCTGGCCTCCCGCAACACCCTGCTGTGCAGCTTCCGCGTGGACGACAACCTCGTCTGGAGCCTGCTCACCAAC
CACAACACGCCCAAGAAGGTCGGCAACGAAACCACCAACACGCTGCACGCCAACATCCTCATGGCCAGCCGCGTGTCGGA
AGTGCTCTGA

Upstream 100 bases:

>100_bases
AATTTCCGATTGGACCGAATTCACAATCCATTTCAACGGATCGCGACACACCTGCACACCGCCAGGGGCCTCGGGATCTG
CTAACGGAAAGGAATGCACC

Downstream 100 bases:

>100_bases
ACCTTCCCTGCCGCCGTCCGACCTTCCCGCCCATCCGCCTCCGAAAGACCGCCATGACCGCAGCTGCCGCCCCCGTGAAG
AGCGTCCTGAACGAATCCAA

Product: flagellar transcriptional activator, FlhD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGINEDAADILASLSAAQVLKLASRNTLLCSFRVDDNLVWSLLTN
HNTPKKVGNETTNTLHANILMASRVSEVL

Sequences:

>Translated_109_residues
MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGINEDAADILASLSAAQVLKLASRNTLLCSFRVDDNLVWSLLTN
HNTPKKVGNETTNTLHANILMASRVSEVL
>Mature_108_residues
TSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGINEDAADILASLSAAQVLKLASRNTLLCSFRVDDNLVWSLLTNH
NTPKKVGNETTNTLHANILMASRVSEVL

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family [H]

Homologues:

Organism=Escherichia coli, GI145693151, Length=105, Percent_Identity=41.9047619047619, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007911
- ProDom:   PD015582 [H]

Pfam domain/function: PF05247 FlhD [H]

EC number: NA

Molecular weight: Translated: 12053; Mature: 11922

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGINEDAADILASLSAAQVLKLASR
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
NTLLCSFRVDDNLVWSLLTNHNTPKKVGNETTNTLHANILMASRVSEVL
CEEEEEEECCCHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGINEDAADILASLSAAQVLKLASR
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
NTLLCSFRVDDNLVWSLLTNHNTPKKVGNETTNTLHANILMASRVSEVL
CEEEEEEECCCHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA