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The map label for this gene is irpA [H]

Identifier: 120610605

GI number: 120610605

Start: 2085101

End: 2086324

Strand: Reverse

Name: irpA [H]

Synonym: Aave_1925

Alternate gene names: 120610605

Gene position: 2086324-2085101 (Counterclockwise)

Preceding gene: 120610606

Following gene: 120610604

Centisome position: 38.98

GC content: 69.12

Gene sequence:

>1224_bases
ATGAACACCGCTTCGTTCCAAACCACCGTTCTCTCCGGGCTGCTGGCCGTCGCCGCGCTCGGCTCCACGGGGGTGGTACT
GGCACAGGCGGCACCGCAGGGTGCCGGCGCGCCCGCCGCGGCCCCTTCGGCCACGGCGGCCACCCCGGCCGCCGTGGCAG
CGCACTACGCGGTACTGGTGCACGCCAACTACGCCGACGCGCTCGCCGCCGCGAAGACCATGCAGGCCGCCATCAGGGCA
TTCACGGCCAAACCCTCGGCGGAGACGCTGGCCGAGGCCCGCAAGACCTGGCTGGCCGCGCGCGAGTTCTATGGCCAGAC
CGAGGCGTTCCGCTTCTATGGCGGCCCCATCGACGACGACAAGGGTCCCGAGGGACAGATCAATGCCTGGCCCATGGACG
AATCCTACGTGGACAGCGTGGAAGGCCGGCCCGACGCGGGCCTGGTGAACGACCGCAAGTTCGCCATCACCAAGAAGAAC
CTCGCCGCGCAGAACGAGCGCGGCGGCGAGGAAAACGTCGCCACGGGCTGGCACGCGATCGAGTTCTTCCTCTGGGGACA
GGACCTGTCCGAAACCGGTCCCGGCGACCGCAACGTCGATGATTTCGTGGATGGCAAAGGCAAGAACGCCGACCGGCGCC
GCCAGTACCTGAACGTGGTCACGGACCTGCTCATCGACGACCTGTCCTTCCTCGTGCAGGCATGGGACCCGAAGGTGCCG
AACAACTACCGCGCGAAGTTCGTCAGGGGGGGCCAGGAATCGGTGCGCAAGATGCTGGTGGGCCTGGGCTCGCTGTCGCG
CGGCGAGCTGGCGGGCGAGCGCCTCGAGGTCGCGCTCAACAGCCAGGACCAGGAGGACGAGCACTCGTGCTTCTCCGACA
ACACGCACCGCGACGCGGTGACGAACGCGCTGGGCATCCGCAACGTCTGGCTCGGAGAGTACAAGCGTGCCGACGGCAGC
CTGGTGAAGGGCGCGTCGCTGCGCGACCTGGTCGCCGCGAAGGACGCCGCGCTGGCCGGGAGGACCACCCGGCAGATCGC
CGCCTCCGTCGAGGCCGCGGAAGGCATCCAGGCCCCGTTCGACCGCGAGATCATCGGCGGCAAGGACGCCCCCGGGCGCC
TGCGCATCCAGAAGACCATCGACAGCCTGACGCAGCAGAGCAAGGACCTCGTCGAGGCGGCCAACGCGATCGGCATCACC
AAGCTGACGCTCGTGCAGCCGTGA

Upstream 100 bases:

>100_bases
CCGCGTCACGCCCCGTGCGGCCCGGCAGCCCGGCAGCCCGGATGCCGTGGACGCCTTCCTCCGTCCACCCGCCTTTTGTC
CCTTCATTTCAGGAGATGCC

Downstream 100 bases:

>100_bases
GGGTGGCGCACGACATGGCCCCCTTCCGCACGAAGGCGCGGCGGCTCTGGGCCGGCGCGGCGCTCGCGGGCACCGGTCTG
GCCGCAGCGCTGCTGTCCGC

Product: putative iron-regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MNTASFQTTVLSGLLAVAALGSTGVVLAQAAPQGAGAPAAAPSATAATPAAVAAHYAVLVHANYADALAAAKTMQAAIRA
FTAKPSAETLAEARKTWLAAREFYGQTEAFRFYGGPIDDDKGPEGQINAWPMDESYVDSVEGRPDAGLVNDRKFAITKKN
LAAQNERGGEENVATGWHAIEFFLWGQDLSETGPGDRNVDDFVDGKGKNADRRRQYLNVVTDLLIDDLSFLVQAWDPKVP
NNYRAKFVRGGQESVRKMLVGLGSLSRGELAGERLEVALNSQDQEDEHSCFSDNTHRDAVTNALGIRNVWLGEYKRADGS
LVKGASLRDLVAAKDAALAGRTTRQIAASVEAAEGIQAPFDREIIGGKDAPGRLRIQKTIDSLTQQSKDLVEAANAIGIT
KLTLVQP

Sequences:

>Translated_407_residues
MNTASFQTTVLSGLLAVAALGSTGVVLAQAAPQGAGAPAAAPSATAATPAAVAAHYAVLVHANYADALAAAKTMQAAIRA
FTAKPSAETLAEARKTWLAAREFYGQTEAFRFYGGPIDDDKGPEGQINAWPMDESYVDSVEGRPDAGLVNDRKFAITKKN
LAAQNERGGEENVATGWHAIEFFLWGQDLSETGPGDRNVDDFVDGKGKNADRRRQYLNVVTDLLIDDLSFLVQAWDPKVP
NNYRAKFVRGGQESVRKMLVGLGSLSRGELAGERLEVALNSQDQEDEHSCFSDNTHRDAVTNALGIRNVWLGEYKRADGS
LVKGASLRDLVAAKDAALAGRTTRQIAASVEAAEGIQAPFDREIIGGKDAPGRLRIQKTIDSLTQQSKDLVEAANAIGIT
KLTLVQP
>Mature_407_residues
MNTASFQTTVLSGLLAVAALGSTGVVLAQAAPQGAGAPAAAPSATAATPAAVAAHYAVLVHANYADALAAAKTMQAAIRA
FTAKPSAETLAEARKTWLAAREFYGQTEAFRFYGGPIDDDKGPEGQINAWPMDESYVDSVEGRPDAGLVNDRKFAITKKN
LAAQNERGGEENVATGWHAIEFFLWGQDLSETGPGDRNVDDFVDGKGKNADRRRQYLNVVTDLLIDDLSFLVQAWDPKVP
NNYRAKFVRGGQESVRKMLVGLGSLSRGELAGERLEVALNSQDQEDEHSCFSDNTHRDAVTNALGIRNVWLGEYKRADGS
LVKGASLRDLVAAKDAALAGRTTRQIAASVEAAEGIQAPFDREIIGGKDAPGRLRIQKTIDSLTQQSKDLVEAANAIGIT
KLTLVQP

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 43392; Mature: 43392

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTASFQTTVLSGLLAVAALGSTGVVLAQAAPQGAGAPAAAPSATAATPAAVAAHYAVLV
CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHEEEEE
HANYADALAAAKTMQAAIRAFTAKPSAETLAEARKTWLAAREFYGQTEAFRFYGGPIDDD
ECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
KGPEGQINAWPMDESYVDSVEGRPDAGLVNDRKFAITKKNLAAQNERGGEENVATGWHAI
CCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCHHCCCEEE
EFFLWGQDLSETGPGDRNVDDFVDGKGKNADRRRQYLNVVTDLLIDDLSFLVQAWDPKVP
EEEEECCCHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NNYRAKFVRGGQESVRKMLVGLGSLSRGELAGERLEVALNSQDQEDEHSCFSDNTHRDAV
CCHHHHHHCCCHHHHHHHHHHCCCCCCCHHCCCCEEEEECCCCCCHHHHHCCCCCHHHHH
TNALGIRNVWLGEYKRADGSLVKGASLRDLVAAKDAALAGRTTRQIAASVEAAEGIQAPF
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
DREIIGGKDAPGRLRIQKTIDSLTQQSKDLVEAANAIGITKLTLVQP
CCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure
MNTASFQTTVLSGLLAVAALGSTGVVLAQAAPQGAGAPAAAPSATAATPAAVAAHYAVLV
CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHEEEEE
HANYADALAAAKTMQAAIRAFTAKPSAETLAEARKTWLAAREFYGQTEAFRFYGGPIDDD
ECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
KGPEGQINAWPMDESYVDSVEGRPDAGLVNDRKFAITKKNLAAQNERGGEENVATGWHAI
CCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCHHCCCEEE
EFFLWGQDLSETGPGDRNVDDFVDGKGKNADRRRQYLNVVTDLLIDDLSFLVQAWDPKVP
EEEEECCCHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NNYRAKFVRGGQESVRKMLVGLGSLSRGELAGERLEVALNSQDQEDEHSCFSDNTHRDAV
CCHHHHHHCCCHHHHHHHHHHCCCCCCCHHCCCCEEEEECCCCCCHHHHHCCCCCHHHHH
TNALGIRNVWLGEYKRADGSLVKGASLRDLVAAKDAALAGRTTRQIAASVEAAEGIQAPF
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
DREIIGGKDAPGRLRIQKTIDSLTQQSKDLVEAANAIGITKLTLVQP
CCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]