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The map label for this gene is rarA [H]

Identifier: 120610553

GI number: 120610553

Start: 2030178

End: 2031566

Strand: Direct

Name: rarA [H]

Synonym: Aave_1873

Alternate gene names: 120610553

Gene position: 2030178-2031566 (Clockwise)

Preceding gene: 120610548

Following gene: 120610554

Centisome position: 37.93

GC content: 64.15

Gene sequence:

>1389_bases
GTGCGGCGGCCTGTCTTTCCCGTTCGCTCCTGCCGGTTTCCCTTCCCGAACCCCCGTTCTTCCGCTGCATCGCATTCCAC
CGCCATGGCAGATCTGTTCTCCACTCCCCCGGTCGCTCCCCTGGCCGAAGCCCTGCGCCCGGCCAGCCTGGACGAGGTGA
TCGGGCAGTCGCACCTGCTGGGGGAGGGCAAGCCGTTGCGGCTGGCGTTCCAGTCGGGCAAGCCGCACTCCATGATCTTC
TGGGGGCCGCCAGGCGTGGGCAAAACGACCCTGGCCCGGCTCACGGCCACGGCGTTCCAATGCGAGTTCATCGCCTTGTC
TGCGGTGTTCTCCGGTGTCAAGGACATCCGTGCCGCCATGGAGCAGGCGCAGCAGAACCTGGCGATGGGCAAGCACACGA
TCCTGTTCGTGGATGAAATCCACAGGTTCAACAAGTCGCAGCAGGACGCGCTGCTTCCCTACGCGGAAAGCGGCCTGGTG
ACCTTCATCGGGGCCACCACCGAGAACCCTTCCTTCGAGGTGAACTCGGCTCTGCTGTCGCGCGCCCAGGTCTATGTCCT
GAAGTCCCTGACGGATGAAGAACTGCGGCTGCTTCTGAAGCGTGCGCAAGAGATGGCCCTCGGCCATCTTCGGTTCGACG
ACCTGGCGACGGACACCATCATCGGCTATGCGGATGGCGACGCCAGAAGGTTCCTGAACCTGCTGGAGCAGACCAGCACG
GCAGCCAATGCTTCGGGGACCACGGCGATCACTGCCGACTTCCTGCAGAACGCCTTGACGCTGAACAGCCGGCGCTTCGA
CAAGGGCGGGGACAATTTCTACGACCAGATTTCAGCCCTGCACAAGTCGGTGCGCGGCTCCCATCCGGACGCTGCCCTCT
ACTGGCTCACGCGCATGCTGGACGGTGGGGCAGACGCCAGGTATCTGGCACGGCGCATTGTCCGCATGGCGTGGGAAGAC
ATCGGCCTGGCCGACCCGAGGGCCATGCAGATCGCCAACGATGCCGCGCTGACCTACGAGCGTCTGGGAAGCCCGGAGGG
CGAGCTGGCCCTGGGGCAGGCCGTGATCTATCTGGCGGTGGCTGCCAAGAGCAACGCGGGGTACAACGCCTACAACGCGG
CCAGGGCCTTCGTGAAGAAGGACAAGAGCCGTGAGGTGCCGGTCCACCTGCGCAACGCGCCCACCAAGCTCATGAAAGAA
CTGGGCTATGGGCACGAGTACCGGTATGCGCATGACGAACCCAATGCCTACGCTGCCGGGGAAACCTACCTTCCCGACGG
CATGGATGAGCCGGGCTGGTATCGGCCGGTGCCCAGAGGCCTCGAAGTGAAGATCGCGGAGAAGCTGGCGGTGCTCAAAA
AGTGGGACGAAGAAGCGCGCAAAAATTGA

Upstream 100 bases:

>100_bases
GGGCGCAGCATGTCGTCGGAGGGTGCGGGGATGCTCGCGGCGCCGGCCTGCAACGCGGAGCCCCCGGATTGGTGCAGGAT
ACCGCCTGCAGGAATAATGG

Downstream 100 bases:

>100_bases
GATGAATGCCTTGGTGAGCGCGCCGGGATTCCGAAAAGTCAATCTCGTTGTGGGGCCGCATACAACATCTTGTGCCGATG
CACAGCACGCATGCGCATAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MRRPVFPVRSCRFPFPNPRSSAASHSTAMADLFSTPPVAPLAEALRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIF
WGPPGVGKTTLARLTATAFQCEFIALSAVFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESGLV
TFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELRLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTST
AANASGTTAITADFLQNALTLNSRRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADARYLARRIVRMAWED
IGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKE
LGYGHEYRYAHDEPNAYAAGETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN

Sequences:

>Translated_462_residues
MRRPVFPVRSCRFPFPNPRSSAASHSTAMADLFSTPPVAPLAEALRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIF
WGPPGVGKTTLARLTATAFQCEFIALSAVFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESGLV
TFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELRLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTST
AANASGTTAITADFLQNALTLNSRRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADARYLARRIVRMAWED
IGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKE
LGYGHEYRYAHDEPNAYAAGETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN
>Mature_462_residues
MRRPVFPVRSCRFPFPNPRSSAASHSTAMADLFSTPPVAPLAEALRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIF
WGPPGVGKTTLARLTATAFQCEFIALSAVFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESGLV
TFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELRLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTST
AANASGTTAITADFLQNALTLNSRRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADARYLARRIVRMAWED
IGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKE
LGYGHEYRYAHDEPNAYAAGETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=457, Percent_Identity=40.9190371991247, Blast_Score=309, Evalue=5e-84,
Organism=Homo sapiens, GI18426904, Length=455, Percent_Identity=37.5824175824176, Blast_Score=258, Evalue=1e-68,
Organism=Escherichia coli, GI1787119, Length=434, Percent_Identity=54.3778801843318, Blast_Score=441, Evalue=1e-125,
Organism=Escherichia coli, GI1786676, Length=271, Percent_Identity=26.1992619926199, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=409, Percent_Identity=41.0757946210269, Blast_Score=289, Evalue=5e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50885; Mature: 50885

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPVFPVRSCRFPFPNPRSSAASHSTAMADLFSTPPVAPLAEALRPASLDEVIGQSHLL
CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHCCHHHC
GEGKPLRLAFQSGKPHSMIFWGPPGVGKTTLARLTATAFQCEFIALSAVFSGVKDIRAAM
CCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESGLVTFIGATTENPSFEVNSALLS
HHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHH
RAQVYVLKSLTDEELRLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTST
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHH
AANASGTTAITADFLQNALTLNSRRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTRML
CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DGGADARYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAV
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEE
AAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYAAG
EECCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECC
ETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN
CCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRPVFPVRSCRFPFPNPRSSAASHSTAMADLFSTPPVAPLAEALRPASLDEVIGQSHLL
CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHCCHHHC
GEGKPLRLAFQSGKPHSMIFWGPPGVGKTTLARLTATAFQCEFIALSAVFSGVKDIRAAM
CCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESGLVTFIGATTENPSFEVNSALLS
HHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHH
RAQVYVLKSLTDEELRLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTST
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHH
AANASGTTAITADFLQNALTLNSRRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTRML
CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DGGADARYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAV
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEE
AAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYAAG
EECCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECC
ETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN
CCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]