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The map label for this gene is ycfJ [H]

Identifier: 120610538

GI number: 120610538

Start: 2013409

End: 2014080

Strand: Reverse

Name: ycfJ [H]

Synonym: Aave_1858

Alternate gene names: 120610538

Gene position: 2014080-2013409 (Counterclockwise)

Preceding gene: 120610539

Following gene: 120610537

Centisome position: 37.63

GC content: 71.13

Gene sequence:

>672_bases
ATGCCGACCGAAAGGAGCTTCTCCATGAAAAAGATCATCGCCTGGACCGCCCTCGCCGCCATGGCCGCCGCGGCCGCGAG
CGCCCACGCGCAGGAACAGGGCCGGGTCCTGTCCGCCACGCCCGTCACCCAGCAGGTCGCCATTCCCCAGCAGGTCTGCG
GCAACGAGACGATTTATTCCGAATCCCGTCCCACCGGCGCCGGCGCCGTGCTGGGCGCCGTGGCCGGTGGCGCCGCCGGC
AATGCGATCGGCAAGGGCGGCGGCCGGGTGGCCGCCACGGCCCTGGGCCTGATCGGCGGCGCGATACTGGGCAACAACAT
CGAGGGCAGCCGCCCCGAGTACCAGAACGTCACGCGCTGCTCCAACCAGACACATTACGAGAACCGGGTCGTGGGCTACG
ACGTGCTGTATGAATATGCAGGCCGCCAGTACACCACGCGCACCCAGCACGATCCGGGCGCCTGGATCCCGCTGAGCGTG
CAGCCCCTGGCGAGCGCACCGCGCGCCCCGGTGTACAGCAGCACCACGACGACCTACGTGCAGCCCGGCGTGGTGGTGTC
CACGCAGCCCGGCCCGCCCGCCTATGTGACGCCGCCGGCCGCCACGGTGATCGAGTACCGCGACGCCTACGGGCGGCCCT
ACGGCCCTCCGGGCGACCCGTACTGGCGCTGA

Upstream 100 bases:

>100_bases
CCGCTCCGCCGGAAAGGCGCCGAACTTTACGGAGTTTTACGTCCTCCCTCCGGCAGCTTCACGGCCGGCACCTAAACTTT
TCTGCAGGCCGGAGCGTTAT

Downstream 100 bases:

>100_bases
ACGCGCCGCGTCCCGCCGCGACGAGGAGCCTTCGGGCTCCTTTTTCATGCCCGGGCCATGGGCGTCCGCCGGGGCCCTGC
CGGGGCATCCCGTGTAGGAC

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MPTERSFSMKKIIAWTALAAMAAAAASAHAQEQGRVLSATPVTQQVAIPQQVCGNETIYSESRPTGAGAVLGAVAGGAAG
NAIGKGGGRVAATALGLIGGAILGNNIEGSRPEYQNVTRCSNQTHYENRVVGYDVLYEYAGRQYTTRTQHDPGAWIPLSV
QPLASAPRAPVYSSTTTTYVQPGVVVSTQPGPPAYVTPPAATVIEYRDAYGRPYGPPGDPYWR

Sequences:

>Translated_223_residues
MPTERSFSMKKIIAWTALAAMAAAAASAHAQEQGRVLSATPVTQQVAIPQQVCGNETIYSESRPTGAGAVLGAVAGGAAG
NAIGKGGGRVAATALGLIGGAILGNNIEGSRPEYQNVTRCSNQTHYENRVVGYDVLYEYAGRQYTTRTQHDPGAWIPLSV
QPLASAPRAPVYSSTTTTYVQPGVVVSTQPGPPAYVTPPAATVIEYRDAYGRPYGPPGDPYWR
>Mature_222_residues
PTERSFSMKKIIAWTALAAMAAAAASAHAQEQGRVLSATPVTQQVAIPQQVCGNETIYSESRPTGAGAVLGAVAGGAAGN
AIGKGGGRVAATALGLIGGAILGNNIEGSRPEYQNVTRCSNQTHYENRVVGYDVLYEYAGRQYTTRTQHDPGAWIPLSVQ
PLASAPRAPVYSSTTTTYVQPGVVVSTQPGPPAYVTPPAATVIEYRDAYGRPYGPPGDPYWR

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=135, Percent_Identity=40, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 23322; Mature: 23191

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTERSFSMKKIIAWTALAAMAAAAASAHAQEQGRVLSATPVTQQVAIPQQVCGNETIYS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCHHHHCCCCCEEC
ESRPTGAGAVLGAVAGGAAGNAIGKGGGRVAATALGLIGGAILGNNIEGSRPEYQNVTRC
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
SNQTHYENRVVGYDVLYEYAGRQYTTRTQHDPGAWIPLSVQPLASAPRAPVYSSTTTTYV
CCCCCCCCEEHHHHHHHHHCCCEECCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEE
QPGVVVSTQPGPPAYVTPPAATVIEYRDAYGRPYGPPGDPYWR
CCCEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTERSFSMKKIIAWTALAAMAAAAASAHAQEQGRVLSATPVTQQVAIPQQVCGNETIYS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCHHHHCCCCCEEC
ESRPTGAGAVLGAVAGGAAGNAIGKGGGRVAATALGLIGGAILGNNIEGSRPEYQNVTRC
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
SNQTHYENRVVGYDVLYEYAGRQYTTRTQHDPGAWIPLSVQPLASAPRAPVYSSTTTTYV
CCCCCCCCEEHHHHHHHHHCCCEECCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEE
QPGVVVSTQPGPPAYVTPPAATVIEYRDAYGRPYGPPGDPYWR
CCCEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]