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The map label for this gene is rci [H]

Identifier: 120610350

GI number: 120610350

Start: 1828755

End: 1829873

Strand: Direct

Name: rci [H]

Synonym: Aave_1667

Alternate gene names: 120610350

Gene position: 1828755-1829873 (Clockwise)

Preceding gene: 120610349

Following gene: 120610370

Centisome position: 34.16

GC content: 65.95

Gene sequence:

>1119_bases
ATGGCAGGCAAGAGAAAACGGGGCAACTCGTGGGAATACATCTTCAAGCGGGCCGGCGTGCTGGAGAAGCCGCTGTACCT
GAGCTTCGATGATGAGGAGGAGGGAGACCGGTACGCGGCCAGGCTCGACGCCCTGCTGGAACGGGGAATCGTACCCACCG
AGCTGCGCACGCCAGATCGGCCCATGACCATCCAGCAGCTGGTGGGGCTTTTCATCCGGGATGCGCACCCGTCGAAGAAG
GACATCGGCGCCCTGAACACCATCGTGGCGTCCCGCGGCGGTGCCCCTCTCACGAAGATCGATTCCGGCTGGGTGGACGA
CTGGATCTCGGAAATGAAGCGGGTCGACAAGCTCGCGCCGGCTTCGATCCGGGCCAAGGTGGGGGCGCTCGCGCGGTGCT
GCGACTGGGGCATGCGCAAGGGCTTCCTGGTCATGCCGGACCACCCGCTGCGCACGCTCCCCGAGGGCTACGCCCAGTAC
ACCAAGGCGGACGAGGCGATCGCCGGCGTGAGGCGCGAGGACGTGGAGCGCGATCGACGGCTGGAGGAGGGCGAGTTCGA
GCAGGCGCTTGCCGTGTTGGCCGGCGGGGTGCTGGCGCGCAAGCAGCGGCCGCTGGTGCTGGAGCACCCCCGGGCACTGC
GCTGCCTGATGATCCTGGCCGTGGAATCGGCCATGCGACTGCGGGAAATGTTCACCCTGCACCTGGCCCAGCTGGACCTA
CCGCGGCGCACGGTGTTCTTGGACAAGACGAAAAATGGGGACAAGAGGCAGGTGCCGCTGTCGTCGGTCGCGCTGGCCGA
GCTGCGGAGCTACCTGGATGATGTGCACGGGCCCTCCCCTGAGCCCGGCACGCGGTTGTTCCCCTGGTGGAATGGGGAAG
CGAATGATCTGGACGCGACGAGCGACTACCTGAGCAAGCTGTTCATCGACATCTTTTCCCAGGCCGGTGCCCAGGGGCTG
AAATTCCATGATCTGCGGCACGAGGCCACGAGCCGGCTGTTCGAGCGCACGCAGCTCTCGGACACGCAGATCATGAAAAT
CACCGGGCACAAGAGCCAGCGGATGCTGATGCGCTACGCGAACCTCCGCGCTTCCGACCTGTCGAAGGCGCTCTGGTAG

Upstream 100 bases:

>100_bases
GCCAAAGGACGCCACTGCCACCCACAAAACGCCGCTTGCCGCCCGTGCTAACTCCGTGAACGGCGTAGAATCGCCGCCGC
AACCAACGCTCAGGAGGGCC

Downstream 100 bases:

>100_bases
GTTGGCGGCTCAGGCGTTCGGCGGTCTGCTCGATGACGATCTTCTCGGCGTAGGCGAGCACGTCGCGCGTGAGGAGCAGG
TAGGCCCGGCCGGCCTTGCC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MAGKRKRGNSWEYIFKRAGVLEKPLYLSFDDEEEGDRYAARLDALLERGIVPTELRTPDRPMTIQQLVGLFIRDAHPSKK
DIGALNTIVASRGGAPLTKIDSGWVDDWISEMKRVDKLAPASIRAKVGALARCCDWGMRKGFLVMPDHPLRTLPEGYAQY
TKADEAIAGVRREDVERDRRLEEGEFEQALAVLAGGVLARKQRPLVLEHPRALRCLMILAVESAMRLREMFTLHLAQLDL
PRRTVFLDKTKNGDKRQVPLSSVALAELRSYLDDVHGPSPEPGTRLFPWWNGEANDLDATSDYLSKLFIDIFSQAGAQGL
KFHDLRHEATSRLFERTQLSDTQIMKITGHKSQRMLMRYANLRASDLSKALW

Sequences:

>Translated_372_residues
MAGKRKRGNSWEYIFKRAGVLEKPLYLSFDDEEEGDRYAARLDALLERGIVPTELRTPDRPMTIQQLVGLFIRDAHPSKK
DIGALNTIVASRGGAPLTKIDSGWVDDWISEMKRVDKLAPASIRAKVGALARCCDWGMRKGFLVMPDHPLRTLPEGYAQY
TKADEAIAGVRREDVERDRRLEEGEFEQALAVLAGGVLARKQRPLVLEHPRALRCLMILAVESAMRLREMFTLHLAQLDL
PRRTVFLDKTKNGDKRQVPLSSVALAELRSYLDDVHGPSPEPGTRLFPWWNGEANDLDATSDYLSKLFIDIFSQAGAQGL
KFHDLRHEATSRLFERTQLSDTQIMKITGHKSQRMLMRYANLRASDLSKALW
>Mature_371_residues
AGKRKRGNSWEYIFKRAGVLEKPLYLSFDDEEEGDRYAARLDALLERGIVPTELRTPDRPMTIQQLVGLFIRDAHPSKKD
IGALNTIVASRGGAPLTKIDSGWVDDWISEMKRVDKLAPASIRAKVGALARCCDWGMRKGFLVMPDHPLRTLPEGYAQYT
KADEAIAGVRREDVERDRRLEEGEFEQALAVLAGGVLARKQRPLVLEHPRALRCLMILAVESAMRLREMFTLHLAQLDLP
RRTVFLDKTKNGDKRQVPLSSVALAELRSYLDDVHGPSPEPGTRLFPWWNGEANDLDATSDYLSKLFIDIFSQAGAQGLK
FHDLRHEATSRLFERTQLSDTQIMKITGHKSQRMLMRYANLRASDLSKALW

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42150; Mature: 42019

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKRKRGNSWEYIFKRAGVLEKPLYLSFDDEEEGDRYAARLDALLERGIVPTELRTPDR
CCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
PMTIQQLVGLFIRDAHPSKKDIGALNTIVASRGGAPLTKIDSGWVDDWISEMKRVDKLAP
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
ASIRAKVGALARCCDWGMRKGFLVMPDHPLRTLPEGYAQYTKADEAIAGVRREDVERDRR
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LEEGEFEQALAVLAGGVLARKQRPLVLEHPRALRCLMILAVESAMRLREMFTLHLAQLDL
CCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRRTVFLDKTKNGDKRQVPLSSVALAELRSYLDDVHGPSPEPGTRLFPWWNGEANDLDAT
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHH
SDYLSKLFIDIFSQAGAQGLKFHDLRHEATSRLFERTQLSDTQIMKITGHKSQRMLMRYA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
NLRASDLSKALW
CCCHHHHHHHCC
>Mature Secondary Structure 
AGKRKRGNSWEYIFKRAGVLEKPLYLSFDDEEEGDRYAARLDALLERGIVPTELRTPDR
CCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
PMTIQQLVGLFIRDAHPSKKDIGALNTIVASRGGAPLTKIDSGWVDDWISEMKRVDKLAP
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
ASIRAKVGALARCCDWGMRKGFLVMPDHPLRTLPEGYAQYTKADEAIAGVRREDVERDRR
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LEEGEFEQALAVLAGGVLARKQRPLVLEHPRALRCLMILAVESAMRLREMFTLHLAQLDL
CCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRRTVFLDKTKNGDKRQVPLSSVALAELRSYLDDVHGPSPEPGTRLFPWWNGEANDLDAT
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHH
SDYLSKLFIDIFSQAGAQGLKFHDLRHEATSRLFERTQLSDTQIMKITGHKSQRMLMRYA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
NLRASDLSKALW
CCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]