| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is livF [H]
Identifier: 120609476
GI number: 120609476
Start: 840026
End: 840850
Strand: Reverse
Name: livF [H]
Synonym: Aave_0782
Alternate gene names: 120609476
Gene position: 840850-840026 (Counterclockwise)
Preceding gene: 120609477
Following gene: 120609475
Centisome position: 15.71
GC content: 66.91
Gene sequence:
>825_bases ATGACCACAGCCCCGCCATCCGCCAGTGAACCGCTGCTCGTCGTCAACGGCATCGAGGTGATCTACCACCATGTGATCCT CGTGCTCAAGGGCGTGTCGCTTTCCGTGCCCGAGGGCGCCATCGTGGCCCTTCTGGGCGGCAATGGCGCGGGCAAGACGA CCACGCTGCGCGCGGTCTCCAACCTGCTGGCGGGCGAGCGCGGGGAGGTCACGAAGGGCAGCATCGAGCTGCGCGGCGAG CGCATCGAGCGGCTGTCTCCCGCTGCGCTGGTGGACCGCGGCGTGGTGCAGGTGATGGAGGGCCGCCACTGTTTTGCCCA CCTCACGATCGAGGAGAACCTGCTCACGGGCGCCTATACGCGGCGCGACCGCGGCGAGATCGCGGCCAACCTGGAGAAGG TGTATGCCTACTTCCCGCGCCTGAAGACGCGGCGCACCAGCCAGGCGGCCTACACCTCGGGCGGCGAGCAGCAGATGTGC GCCATCGGCCGCGCGCTCATGGCCAACCCGCGCATGGTGCTGCTGGACGAGCCCTCCATGGGCCTGGCGCCGCAGATCGT GGACGAGGTCTTCCACATCGTGCGCGACCTCAATACGCGCGAGAAGGTCACCTTCCTGCTGGCCGAGCAGAACACGCACA TGGCGCTGAAGTACGCGGACTACGGCTACATCCTCGAAAGCGGCCGCGTGGTGATGGACGGCGCCGCTTCCGACCTTGCC AACAACGAGGACGTGAAGGAGTTCTACCTGGGCATGGGCGGGGACGAGCGCAAGAGTTTCAAGGATGCGAAGAGCTACAA GCGGCGCAAGCGGTGGCTTGCCTGA
Upstream 100 bases:
>100_bases CGGTGTCCCTCGTACCCCATGCCCAAGGCAGCGCCGCACTCCACTATGCGCCACGCCTCGGAGCGCACAGCCAACTCACC CCATGCCCACGGAGCCAGCC
Downstream 100 bases:
>100_bases TCTGATGAACTACCCCCTGTGGCGCTGCGCGCCTTCCCCCTTCTCTCGCCGTGCTTCGCACGCCGGGAAGGGGGACGACG CCAGTGGCCCGGCGAAGCCG
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTTAPPSASEPLLVVNGIEVIYHHVILVLKGVSLSVPEGAIVALLGGNGAGKTTTLRAVSNLLAGERGEVTKGSIELRGE RIERLSPAALVDRGVVQVMEGRHCFAHLTIEENLLTGAYTRRDRGEIAANLEKVYAYFPRLKTRRTSQAAYTSGGEQQMC AIGRALMANPRMVLLDEPSMGLAPQIVDEVFHIVRDLNTREKVTFLLAEQNTHMALKYADYGYILESGRVVMDGAASDLA NNEDVKEFYLGMGGDERKSFKDAKSYKRRKRWLA
Sequences:
>Translated_274_residues MTTAPPSASEPLLVVNGIEVIYHHVILVLKGVSLSVPEGAIVALLGGNGAGKTTTLRAVSNLLAGERGEVTKGSIELRGE RIERLSPAALVDRGVVQVMEGRHCFAHLTIEENLLTGAYTRRDRGEIAANLEKVYAYFPRLKTRRTSQAAYTSGGEQQMC AIGRALMANPRMVLLDEPSMGLAPQIVDEVFHIVRDLNTREKVTFLLAEQNTHMALKYADYGYILESGRVVMDGAASDLA NNEDVKEFYLGMGGDERKSFKDAKSYKRRKRWLA >Mature_273_residues TTAPPSASEPLLVVNGIEVIYHHVILVLKGVSLSVPEGAIVALLGGNGAGKTTTLRAVSNLLAGERGEVTKGSIELRGER IERLSPAALVDRGVVQVMEGRHCFAHLTIEENLLTGAYTRRDRGEIAANLEKVYAYFPRLKTRRTSQAAYTSGGEQQMCA IGRALMANPRMVLLDEPSMGLAPQIVDEVFHIVRDLNTREKVTFLLAEQNTHMALKYADYGYILESGRVVMDGAASDLAN NEDVKEFYLGMGGDERKSFKDAKSYKRRKRWLA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=26.0869565217391, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI42490749, Length=228, Percent_Identity=30.2631578947368, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI9961252, Length=223, Percent_Identity=28.6995515695067, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=223, Percent_Identity=28.6995515695067, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9961250, Length=223, Percent_Identity=28.6995515695067, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27477115, Length=232, Percent_Identity=26.7241379310345, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI42741659, Length=252, Percent_Identity=26.984126984127, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592964, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI171184400, Length=215, Percent_Identity=28.3720930232558, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592971, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI46592978, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI46592915, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI46592956, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI46592898, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=27.1889400921659, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI11967969, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=24.8803827751196, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI105990541, Length=215, Percent_Identity=28.3720930232558, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082268, Length=227, Percent_Identity=45.374449339207, Blast_Score=175, Evalue=3e-45, Organism=Escherichia coli, GI1788225, Length=218, Percent_Identity=34.4036697247706, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789864, Length=261, Percent_Identity=27.9693486590038, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=31.4655172413793, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=31.4655172413793, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.1369863013699, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=31.4410480349345, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=29.7674418604651, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=28.4518828451883, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=30.5555555555556, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.5106382978723, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786398, Length=234, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787792, Length=236, Percent_Identity=26.6949152542373, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI87081834, Length=196, Percent_Identity=33.1632653061224, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87082267, Length=201, Percent_Identity=28.8557213930348, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=27.1966527196653, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789586, Length=233, Percent_Identity=27.4678111587983, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87081791, Length=237, Percent_Identity=28.2700421940928, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786253, Length=253, Percent_Identity=26.4822134387352, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786872, Length=208, Percent_Identity=30.2884615384615, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=26.9911504424779, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=252, Percent_Identity=26.5873015873016, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788210, Length=228, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788472, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=26.9565217391304, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=26.1904761904762, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=179, Percent_Identity=31.2849162011173, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786319, Length=173, Percent_Identity=31.2138728323699, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48995001, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=26.9911504424779, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=196, Percent_Identity=25, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=25.8771929824561, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=31.8627450980392, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=233, Percent_Identity=26.6094420600858, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790162, Length=224, Percent_Identity=21.875, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=28.7610619469027, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=28.7179487179487, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=27.4611398963731, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=209, Percent_Identity=31.1004784688995, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1789962, Length=263, Percent_Identity=23.1939163498099, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193211017, Length=161, Percent_Identity=32.9192546583851, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=161, Percent_Identity=32.9192546583851, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211015, Length=161, Percent_Identity=32.9192546583851, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71984940, Length=266, Percent_Identity=27.0676691729323, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558664, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115535101, Length=219, Percent_Identity=28.310502283105, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI25146777, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=162, Percent_Identity=30.8641975308642, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193209708, Length=238, Percent_Identity=28.1512605042017, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=217, Percent_Identity=28.110599078341, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567269, Length=217, Percent_Identity=28.110599078341, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71996550, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983510, Length=246, Percent_Identity=26.0162601626016, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=246, Percent_Identity=26.0162601626016, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983523, Length=246, Percent_Identity=26.0162601626016, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=170, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=224, Percent_Identity=27.6785714285714, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI85726357, Length=224, Percent_Identity=27.2321428571429, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581191, Length=215, Percent_Identity=22.7906976744186, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581189, Length=215, Percent_Identity=22.7906976744186, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581193, Length=215, Percent_Identity=22.7906976744186, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581195, Length=215, Percent_Identity=22.7906976744186, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85816269, Length=221, Percent_Identity=25.3393665158371, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580553, Length=221, Percent_Identity=25.3393665158371, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85724864, Length=226, Percent_Identity=26.1061946902655, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580555, Length=226, Percent_Identity=26.1061946902655, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI281363262, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30107; Mature: 29976
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAPPSASEPLLVVNGIEVIYHHVILVLKGVSLSVPEGAIVALLGGNGAGKTTTLRAVS CCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCHHHHHHHH NLLAGERGEVTKGSIELRGERIERLSPAALVDRGVVQVMEGRHCFAHLTIEENLLTGAYT HHHCCCCCCCCCCCEEECHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHCCHHC RRDRGEIAANLEKVYAYFPRLKTRRTSQAAYTSGGEQQMCAIGRALMANPRMVLLDEPSM CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCC GLAPQIVDEVFHIVRDLNTREKVTFLLAEQNTHMALKYADYGYILESGRVVMDGAASDLA CCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEECCCCEEEECCCEEEECCHHHCC NNEDVKEFYLGMGGDERKSFKDAKSYKRRKRWLA CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTAPPSASEPLLVVNGIEVIYHHVILVLKGVSLSVPEGAIVALLGGNGAGKTTTLRAVS CCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCHHHHHHHH NLLAGERGEVTKGSIELRGERIERLSPAALVDRGVVQVMEGRHCFAHLTIEENLLTGAYT HHHCCCCCCCCCCCEEECHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHCCHHC RRDRGEIAANLEKVYAYFPRLKTRRTSQAAYTSGGEQQMCAIGRALMANPRMVLLDEPSM CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCC GLAPQIVDEVFHIVRDLNTREKVTFLLAEQNTHMALKYADYGYILESGRVVMDGAASDLA CCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEECCCCEEEECCCEEEECCHHHCC NNEDVKEFYLGMGGDERKSFKDAKSYKRRKRWLA CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]