| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is ilvD [H]
Identifier: 120609448
GI number: 120609448
Start: 808085
End: 809866
Strand: Reverse
Name: ilvD [H]
Synonym: Aave_0754
Alternate gene names: 120609448
Gene position: 809866-808085 (Counterclockwise)
Preceding gene: 120609449
Following gene: 120609447
Centisome position: 15.13
GC content: 71.44
Gene sequence:
>1782_bases ATGACCCCACCCGAAGGCCGCCGCTTCCGCTCGCGCGACTGGTTCGCCGACCCGGCGCGCTCCGACATGACCGCGCTCTA CCTCGAGCGCTTCATGAACTACGGGCTCACGCCCGAGGAGCTGCGCTCGGGCCGGCCCATCATCGGCATCGCCCAGACCG GCAGCGATCTTTCCCCCTGCAACCGCATCCACCTCGAACTGGCCCGCCGCGTGCGCGACGGCATCCGCGATGCGGGTGGC ATCCCGATCGAATTTCCCGTCCACCCGATCTTCGAGAACTGCCGCCGCCCCTCCGCCGCGCTGGACCGCAACCTCGCCTA CCTGGGCCTGGTCGAGATCCTCTACGGCTACCCCATCGACGCCGTGGTGCTGACCACCGGCTGCGACAAGACCACGCCGG CCGGCATCATGGCCGCTTCCACCGTCGATATCCCCGCCATCGTGCTCTCGGGCGGGCCGATGCTCGATGGCTGGCACGAG GGCGAACTGGTCGGCTCGGGCACCGTCATCTGGCGCAGCCGCCGCATGCTGGCGGCCGGCGAGATCGACGAGGAAGAATT CCTGCAGCGCGCCTGCGACAGCGCGCCCTCGGCCGGCCACTGCAACACCATGGGCACGGCCTCCACCATGAACGCGGTGG CCGAGGCCCTGGGCCTCTCGCTGCCCGGCTGCGCCGCCATCCCCGCGCCCTACCGCGAGCGCGGCCAGATGGCCTATGCC ACCGGCCGGCGCATCGTCGAGATGGCGCACGAAGACCTGCGCCCCTCGCGCGTGCTCACCCGCGAGAGCTTCCTCAACGC GCTGGCGGTGGTCAGCTGCGCGGGCGGCTCCAGCAACGCGCAGGTGCACATCCAGGCCATGGCGCGCCATGCCGGCGTCG AACTGCACCCGCGCGACTGGACCGACCATGCCTACGGCCTGCCCCTGCTGGTCAACATGCAGCCCGCCGGCAAATACCTG GGCGAGCGCTTCTTCCGTGCCGGCGGCGTGCCCGCGGTGATGTGGGAGCTGCTGCAGGCCGGCCGGCTGCACGGCGACTG CGCCAGCGTCACGGGCCGCAGCATCGCCGAGAACCTGCAGGGCCGCGAAGCGACGGACCGCGAGGTGATCCGCACCTTCG CCGACCCGCTGATGGACAAGGCCGGCTTCCTGGTGCTCTCGGGCAACCTGTTCGATTTCGGCATCATGAAAACCTCGGTG ATCTCCGAGGCCTTCCGCGCGCGCTACCTCTGCCGGCCGGGCCATGAAGACGTGTTCACGGCCCGGGCCATCGTTTTCGA CGGCGCCGAGGACTACCACGCGCGCATCAACGACCCTGCCCTCGGCATCGACGAGGACTGCATCCTGGTGATGCGCGGCG CCGGCCCGCTGGGCTGGCCCGGCTCGGCCGAGGTGGTCAACATGCAGCCGCCCGATGCGCTGATCCGGCGCGGCATCCGG GCGCTGCCCACGCTGGGCGACGGCCGGCAATCCGGCACCGCCGACAGCCCCTCCATCCTCAACGCCTCGCCCGAGAGCGC GGCGGGCGGGGGCCTCGCCTGGCTGCAGACCGGCGACCTGATCCTGATCGACCTGCAGCGCGGCCACTGCAACGCGCTGG TGCCCGACGATGAGATCGCCCGCCGCCGCCGCGAACTGCCGCCGCCGCCCGTGCCTGCGAGCCGCTCGCCCTGGGAAGCG CTCTACCGCGAGAAAACCGGCCAGCTCGCCGACGGCGCCACGCTGGATTTCGCGCTGCAGTTCCGCCGCATCGCCGAGCA GACACCCCGCCACAACCACTGA
Upstream 100 bases:
>100_bases AGCCCGTGGTCGCCAGGTACAGCAAGGAATTCGGCGAGGACACCACCCGCGAAATGATGGCCGAGCTGGAAAAGGCCCGC CGCAAGTAACCGAAAACGAC
Downstream 100 bases:
>100_bases CGCCCGAGGACGAGAACCATGAACGACGAACGCACGGGCCTGCTGCCCGACGACGGACTGGCCGGCACGCTGGTGGCCCG GGCCTGGACACCCGGCCCGC
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 593; Mature: 592
Protein sequence:
>593_residues MTPPEGRRFRSRDWFADPARSDMTALYLERFMNYGLTPEELRSGRPIIGIAQTGSDLSPCNRIHLELARRVRDGIRDAGG IPIEFPVHPIFENCRRPSAALDRNLAYLGLVEILYGYPIDAVVLTTGCDKTTPAGIMAASTVDIPAIVLSGGPMLDGWHE GELVGSGTVIWRSRRMLAAGEIDEEEFLQRACDSAPSAGHCNTMGTASTMNAVAEALGLSLPGCAAIPAPYRERGQMAYA TGRRIVEMAHEDLRPSRVLTRESFLNALAVVSCAGGSSNAQVHIQAMARHAGVELHPRDWTDHAYGLPLLVNMQPAGKYL GERFFRAGGVPAVMWELLQAGRLHGDCASVTGRSIAENLQGREATDREVIRTFADPLMDKAGFLVLSGNLFDFGIMKTSV ISEAFRARYLCRPGHEDVFTARAIVFDGAEDYHARINDPALGIDEDCILVMRGAGPLGWPGSAEVVNMQPPDALIRRGIR ALPTLGDGRQSGTADSPSILNASPESAAGGGLAWLQTGDLILIDLQRGHCNALVPDDEIARRRRELPPPPVPASRSPWEA LYREKTGQLADGATLDFALQFRRIAEQTPRHNH
Sequences:
>Translated_593_residues MTPPEGRRFRSRDWFADPARSDMTALYLERFMNYGLTPEELRSGRPIIGIAQTGSDLSPCNRIHLELARRVRDGIRDAGG IPIEFPVHPIFENCRRPSAALDRNLAYLGLVEILYGYPIDAVVLTTGCDKTTPAGIMAASTVDIPAIVLSGGPMLDGWHE GELVGSGTVIWRSRRMLAAGEIDEEEFLQRACDSAPSAGHCNTMGTASTMNAVAEALGLSLPGCAAIPAPYRERGQMAYA TGRRIVEMAHEDLRPSRVLTRESFLNALAVVSCAGGSSNAQVHIQAMARHAGVELHPRDWTDHAYGLPLLVNMQPAGKYL GERFFRAGGVPAVMWELLQAGRLHGDCASVTGRSIAENLQGREATDREVIRTFADPLMDKAGFLVLSGNLFDFGIMKTSV ISEAFRARYLCRPGHEDVFTARAIVFDGAEDYHARINDPALGIDEDCILVMRGAGPLGWPGSAEVVNMQPPDALIRRGIR ALPTLGDGRQSGTADSPSILNASPESAAGGGLAWLQTGDLILIDLQRGHCNALVPDDEIARRRRELPPPPVPASRSPWEA LYREKTGQLADGATLDFALQFRRIAEQTPRHNH >Mature_592_residues TPPEGRRFRSRDWFADPARSDMTALYLERFMNYGLTPEELRSGRPIIGIAQTGSDLSPCNRIHLELARRVRDGIRDAGGI PIEFPVHPIFENCRRPSAALDRNLAYLGLVEILYGYPIDAVVLTTGCDKTTPAGIMAASTVDIPAIVLSGGPMLDGWHEG ELVGSGTVIWRSRRMLAAGEIDEEEFLQRACDSAPSAGHCNTMGTASTMNAVAEALGLSLPGCAAIPAPYRERGQMAYAT GRRIVEMAHEDLRPSRVLTRESFLNALAVVSCAGGSSNAQVHIQAMARHAGVELHPRDWTDHAYGLPLLVNMQPAGKYLG ERFFRAGGVPAVMWELLQAGRLHGDCASVTGRSIAENLQGREATDREVIRTFADPLMDKAGFLVLSGNLFDFGIMKTSVI SEAFRARYLCRPGHEDVFTARAIVFDGAEDYHARINDPALGIDEDCILVMRGAGPLGWPGSAEVVNMQPPDALIRRGIRA LPTLGDGRQSGTADSPSILNASPESAAGGGLAWLQTGDLILIDLQRGHCNALVPDDEIARRRRELPPPPVPASRSPWEAL YREKTGQLADGATLDFALQFRRIAEQTPRHNH
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI1788157, Length=478, Percent_Identity=30.7531380753138, Blast_Score=179, Evalue=3e-46, Organism=Escherichia coli, GI48994964, Length=569, Percent_Identity=27.9437609841828, Blast_Score=172, Evalue=4e-44, Organism=Escherichia coli, GI2367371, Length=512, Percent_Identity=27.734375, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1786464, Length=434, Percent_Identity=29.7235023041475, Blast_Score=117, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6322476, Length=561, Percent_Identity=27.2727272727273, Blast_Score=193, Evalue=6e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 64405; Mature: 64274
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPEGRRFRSRDWFADPARSDMTALYLERFMNYGLTPEELRSGRPIIGIAQTGSDLSPC CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCHH NRIHLELARRVRDGIRDAGGIPIEFPVHPIFENCRRPSAALDRNLAYLGLVEILYGYPID HHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCC AVVLTTGCDKTTPAGIMAASTVDIPAIVLSGGPMLDGWHEGELVGSGTVIWRSRRMLAAG EEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEEECCEEEEECCCEEECC EIDEEEFLQRACDSAPSAGHCNTMGTASTMNAVAEALGLSLPGCAAIPAPYRERGQMAYA CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEHH TGRRIVEMAHEDLRPSRVLTRESFLNALAVVSCAGGSSNAQVHIQAMARHAGVELHPRDW HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHCCCEECCCCC TDHAYGLPLLVNMQPAGKYLGERFFRAGGVPAVMWELLQAGRLHGDCASVTGRSIAENLQ CCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GREATDREVIRTFADPLMDKAGFLVLSGNLFDFGIMKTSVISEAFRARYLCRPGHEDVFT CCCCHHHHHHHHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHE ARAIVFDGAEDYHARINDPALGIDEDCILVMRGAGPLGWPGSAEVVNMQPPDALIRRGIR EEEEEECCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHH ALPTLGDGRQSGTADSPSILNASPESAAGGGLAWLQTGDLILIDLQRGHCNALVPDDEIA HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHH RRRRELPPPPVPASRSPWEALYREKTGQLADGATLDFALQFRRIAEQTPRHNH HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TPPEGRRFRSRDWFADPARSDMTALYLERFMNYGLTPEELRSGRPIIGIAQTGSDLSPC CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCHH NRIHLELARRVRDGIRDAGGIPIEFPVHPIFENCRRPSAALDRNLAYLGLVEILYGYPID HHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCC AVVLTTGCDKTTPAGIMAASTVDIPAIVLSGGPMLDGWHEGELVGSGTVIWRSRRMLAAG EEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEEECCEEEEECCCEEECC EIDEEEFLQRACDSAPSAGHCNTMGTASTMNAVAEALGLSLPGCAAIPAPYRERGQMAYA CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEHH TGRRIVEMAHEDLRPSRVLTRESFLNALAVVSCAGGSSNAQVHIQAMARHAGVELHPRDW HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHCCCEECCCCC TDHAYGLPLLVNMQPAGKYLGERFFRAGGVPAVMWELLQAGRLHGDCASVTGRSIAENLQ CCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GREATDREVIRTFADPLMDKAGFLVLSGNLFDFGIMKTSVISEAFRARYLCRPGHEDVFT CCCCHHHHHHHHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHE ARAIVFDGAEDYHARINDPALGIDEDCILVMRGAGPLGWPGSAEVVNMQPPDALIRRGIR EEEEEECCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHH ALPTLGDGRQSGTADSPSILNASPESAAGGGLAWLQTGDLILIDLQRGHCNALVPDDEIA HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHH RRRRELPPPPVPASRSPWEALYREKTGQLADGATLDFALQFRRIAEQTPRHNH HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]