| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is trbE [H]
Identifier: 120609425
GI number: 120609425
Start: 782053
End: 784503
Strand: Direct
Name: trbE [H]
Synonym: Aave_0729
Alternate gene names: 120609425
Gene position: 782053-784503 (Clockwise)
Preceding gene: 120609424
Following gene: 120609426
Centisome position: 14.61
GC content: 65.44
Gene sequence:
>2451_bases ATGCTGAACCTTGCCGAATACCACCAGCGGCCCGCGCTGCTGGCCGACTGGTTGCCCTGGGCCGGGCTGATCGCGCCGGG CGTGGTACTGAACAAGGATGGCTCGTTCCAGCGCACGGCACGTTTTCGTGGGCCGGATCTGGACAGCGCGACGCAAGGCG AGCTGATCGCCACGTCGGCGCGGCTCAACAACGCGCTGCGTCGCCTGGGATCGGGCTGGGCCTTGTTTATCGAAGCTGAG CGCCGCGCAGCGGCGGGCTATCCACGTTCCGACTTCCCCGAACCGTTGTCCTGGCTGGTGGAGGAAGAACGCCGCGCGGC TTTCGAGGAATCCGGCCATCACTACGAGAGCGCCTATCACCTCACGCTGGCATATCTGCCACCAGAAGAATCCCGCGCCC GCGCTGCCAAGATGCTCTATGAGAACGCGCCGGGCGACGGTGTGGACTGGCAGGGTCGGCTGGAAGCCTTCGTGGCTGAA ACGGATCGAGTGTTCGACCTGCTCGACGGCGTCAAGCCAGAGATTGCCTGGCTGGATGACGCGCAGACACTGACCTACCT GCACGCCACGGTGTCCACGCGGCGCTACCGCGTCGGCGTGCCCGACGTGCCATTCCACATCGACGCGCTGCTGGCCGATT CCGCCCTGGTCGGTGGCCTGGCTCCCATGCTGGGCGACCGGCATCTACGCGTGGTGTCGGTGCGAGGATTTCCGACCTCA ACCTGGCCGGGGATTCTGGACGACCTCAACCGCTTGGGCTTCGGCTACCGCTGGAGCACGCGCTTTTTGTGCCTGGACAA AGCCGAGGCGGAAAAAGAACTGGGCCGTCTGCGCCGCCAGTGGTTCGCCAAGCGCAAGAACGTCGTCGCGCTGCTGCGCG AAACGATCTTCCAGCAGGAAAGCCCGCTGGTCGATACCGACGCCAACAACAAAGCCGCCGATGCGGATGCCGCCTTGCAG GAGCTGGGCAGCGATCAAGTTGCCTTCGGCTACCTGACGGCCACCGTCGCCGTCATGGATGCCGATGCCGCCGTGGCCGA CGAGAAGCTGCGGATGGTGGAGCGCGTCATCCAGGGGCGCGGCTTCGTCACCATCCCCGAAACCTTAAACGCCGTGGATG CCTGGCTGTCGTCCATTCCCGGCAACGCCTATGCCAACGTGCGCCAGCCCATCGTCTCGACGCTGAATCTGGCGCACCTG ATGCCGGTGTCTGCCGTTTGGGCCGGGCCGGAGAAGAACGCGCATCTGGATGGCCCGCCGCTGATCGTCACCCGCACCGA TGGCGCGACGCCGTTCCGGCTGGTGACGCATATCGGCGACGTGGGCCACACGCTGGTTGCCGGGCCGACCGGCATGGGCA AGTCGGTCTTGCTCGCCACGCTGGCAATGCAGTTTCGCCGCTATCCCGGCTCGCGCATCTTCGCCTTCGACATGGGCCGC TCGATGCGCGCCACCATCCTGGGGCTGGGCGGCGAGCATTACGACCTCGGCAACGATGGGGCGATCGCCTTCCAGCCACT GGCCCGCATCGACCAGGAGGGCTACCGCACCTGGGCCGCTGAGTGGGTGGAAGGTCGCCTGCTGCATGAAGGTGTTGCCA TCGGCCCGGACGAGAAGGCCGCGATCTGGTCAGCACTCGGCAGCCTCGCTGGTGCGCCGGTCGGGCAGCGCACGCTGACG GGTCTGTCGGTGCTGTTGCAGTCGAACGCACTGCGCCAGGCGCTCGCGCCCTATGTGCTGGGTGGTGCCCACGGCAAGCT GCTGGATGCCGATGCCGACCGCCTGGGTTCCGGCAGCGTGCAGGGCTTCGAGATGGAAGAACTGATGCACAGCAAAGCGG CGGTGCTGGCCGTGCTGGGCTACCTGTTCGCCCGCTTCGATGAACGCTTCGACGGCGCGCCCACGCTGCTGATCCTCGAT GAAGCCTGGTTGTTTCTCGATGACCCGGTGTTCGCCGCCCGCATCCGCCAGTGGCTCAAGACACTGCGCAAGAAAAACGT CAGTGTCATCTTCGCCACGCAATCGTTGGCTGACATCAAGGATTCGAGCATTGCCCCGGCGGTGATCGAAAGCTGCGCGA GTCGCATTTTCCTCCCCAATCCGCAGGCCACAGAGCCGCATATCCGCACGATCTACGAAGGCTTCGGGCTGAACGCGCGC CAGATCGAGATCGTGGCGACCGCGCAGCCCAAGCGTGACTACTACTACCAATCGCGCATGGGCAATCGTCTGTTCGACCT CGACCTGGGGCCAGCCACGTTGGCTTTCGCCGGGGCATCCACCCCACAAGACCAACGCGATATAGATCGCGTGCTGTTGG ACGCAGGCACACCGGGCTTCGCCGGTGCGTGGCTGCGCCATCGTGGCCTCGATTGGGCCGCTGATCTGCTGCCGTCCTCG CCGGCGGCAGCTTCTTTCCTCGCTTCTCAACGACCGGAGGTTTCACCATGA
Upstream 100 bases:
>100_bases GCTGGCGGTGTGGGGTGCTCGTGTCGATCCGCAGTTCATGCAGGTCTTCGCTCGGCACATCAAGCACAAGCCGCTACTGG ACGTATAGGGAGAAGCCGAC
Downstream 100 bases:
>100_bases AGACCCAATTCCGTTTGCTGTCCGTCTCGCTCGCCGCCGTGCTGTCGGTATCGCTGCTGGCCTCACAACCTGCGTCCGCG CTGACGGTGTTCGACCCGTC
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MLNLAEYHQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAAGYPRSDFPEPLSWLVEEERRAAFEESGHHYESAYHLTLAYLPPEESRARAAKMLYENAPGDGVDWQGRLEAFVAE TDRVFDLLDGVKPEIAWLDDAQTLTYLHATVSTRRYRVGVPDVPFHIDALLADSALVGGLAPMLGDRHLRVVSVRGFPTS TWPGILDDLNRLGFGYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVAVMDADAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGNDGAIAFQPLARIDQEGYRTWAAEWVEGRLLHEGVAIGPDEKAAIWSALGSLAGAPVGQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADADRLGSGSVQGFEMEELMHSKAAVLAVLGYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAVIESCASRIFLPNPQATEPHIRTIYEGFGLNAR QIEIVATAQPKRDYYYQSRMGNRLFDLDLGPATLAFAGASTPQDQRDIDRVLLDAGTPGFAGAWLRHRGLDWAADLLPSS PAAASFLASQRPEVSP
Sequences:
>Translated_816_residues MLNLAEYHQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAAGYPRSDFPEPLSWLVEEERRAAFEESGHHYESAYHLTLAYLPPEESRARAAKMLYENAPGDGVDWQGRLEAFVAE TDRVFDLLDGVKPEIAWLDDAQTLTYLHATVSTRRYRVGVPDVPFHIDALLADSALVGGLAPMLGDRHLRVVSVRGFPTS TWPGILDDLNRLGFGYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVAVMDADAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGNDGAIAFQPLARIDQEGYRTWAAEWVEGRLLHEGVAIGPDEKAAIWSALGSLAGAPVGQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADADRLGSGSVQGFEMEELMHSKAAVLAVLGYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAVIESCASRIFLPNPQATEPHIRTIYEGFGLNAR QIEIVATAQPKRDYYYQSRMGNRLFDLDLGPATLAFAGASTPQDQRDIDRVLLDAGTPGFAGAWLRHRGLDWAADLLPSS PAAASFLASQRPEVSP >Mature_816_residues MLNLAEYHQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAAGYPRSDFPEPLSWLVEEERRAAFEESGHHYESAYHLTLAYLPPEESRARAAKMLYENAPGDGVDWQGRLEAFVAE TDRVFDLLDGVKPEIAWLDDAQTLTYLHATVSTRRYRVGVPDVPFHIDALLADSALVGGLAPMLGDRHLRVVSVRGFPTS TWPGILDDLNRLGFGYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVAVMDADAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPEKNAHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGNDGAIAFQPLARIDQEGYRTWAAEWVEGRLLHEGVAIGPDEKAAIWSALGSLAGAPVGQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADADRLGSGSVQGFEMEELMHSKAAVLAVLGYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAVIESCASRIFLPNPQATEPHIRTIYEGFGLNAR QIEIVATAQPKRDYYYQSRMGNRLFDLDLGPATLAFAGASTPQDQRDIDRVLLDAGTPGFAGAWLRHRGLDWAADLLPSS PAAASFLASQRPEVSP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 89240; Mature: 89240
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLAEYHQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEECCCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRAAAGYPRSDFPEPLSWLVEEERRAAFEESGHHYESAYH HHHHHHHHHCCCEEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE LTLAYLPPEESRARAAKMLYENAPGDGVDWQGRLEAFVAETDRVFDLLDGVKPEIAWLDD EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCC AQTLTYLHATVSTRRYRVGVPDVPFHIDALLADSALVGGLAPMLGDRHLRVVSVRGFPTS CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC TWPGILDDLNRLGFGYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQE CCCHHHHHHHHCCCCEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDANNKAADADAALQELGSDQVAFGYLTATVAVMDADAAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHLMPVSAVWAGPEKNAHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGNDGAIAFQPLARIDQEGYRTWAAEWVEGRLLHEGVAIGPDEKA CCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHCCCEECCCCHH AIWSALGSLAGAPVGQRTLTGLSVLLQSNALRQALAPYVLGGAHGKLLDADADRLGSGSV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCCCC QGFEMEELMHSKAAVLAVLGYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAVIESCASRIFLPNPQATEPHIRTIYEGFGLNAR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCE QIEIVATAQPKRDYYYQSRMGNRLFDLDLGPATLAFAGASTPQDQRDIDRVLLDAGTPGF EEEEEEECCCCHHHHHHHHCCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCH AGAWLRHRGLDWAADLLPSSPAAASFLASQRPEVSP HHHHHHHCCCCHHHHHCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MLNLAEYHQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEECCCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRAAAGYPRSDFPEPLSWLVEEERRAAFEESGHHYESAYH HHHHHHHHHCCCEEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE LTLAYLPPEESRARAAKMLYENAPGDGVDWQGRLEAFVAETDRVFDLLDGVKPEIAWLDD EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCC AQTLTYLHATVSTRRYRVGVPDVPFHIDALLADSALVGGLAPMLGDRHLRVVSVRGFPTS CHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC TWPGILDDLNRLGFGYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQE CCCHHHHHHHHCCCCEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDANNKAADADAALQELGSDQVAFGYLTATVAVMDADAAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHLMPVSAVWAGPEKNAHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGNDGAIAFQPLARIDQEGYRTWAAEWVEGRLLHEGVAIGPDEKA CCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHCCCEECCCCHH AIWSALGSLAGAPVGQRTLTGLSVLLQSNALRQALAPYVLGGAHGKLLDADADRLGSGSV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCCCC QGFEMEELMHSKAAVLAVLGYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAVIESCASRIFLPNPQATEPHIRTIYEGFGLNAR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCE QIEIVATAQPKRDYYYQSRMGNRLFDLDLGPATLAFAGASTPQDQRDIDRVLLDAGTPGF EEEEEEECCCCHHHHHHHHCCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCH AGAWLRHRGLDWAADLLPSSPAAASFLASQRPEVSP HHHHHHHCCCCHHHHHCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]