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The map label for this gene is ytbD [H]

Identifier: 120609397

GI number: 120609397

Start: 759871

End: 761055

Strand: Direct

Name: ytbD [H]

Synonym: Aave_0700

Alternate gene names: 120609397

Gene position: 759871-761055 (Clockwise)

Preceding gene: 120609396

Following gene: 120609398

Centisome position: 14.2

GC content: 49.28

Gene sequence:

>1185_bases
ATGCCAATTGCCTTGCTGGCTCTAACCATATGTTCTTTTGCAATCGGAACTGCAGAGTTTGTCATTGTGGGACTGATTCC
CATTGTGGCAAACGACTTGGTGGTTAGCCTGCCGTCTGCAGGCCTTCTCGTCAGCCTGTATGCAATGGGTGTTGCCATCG
GTGCTCCCTTGTTGACTGCCGTCACAGGAAAAGTCCATCGGAAAGTTCTTTTGATCGCTTTGATGGCACTCTTTACTGCG
AGCAACATAATGGCATGGGCATCACCGAGTTTTGAGACATTGATCGCAGCACGTATTTTGACAGGGTTGGCTCATGGAGT
CTTTTACTCAATTGCAACAATCATTGCTGCAGGACTTGTGCCCAAAGAGAAGGCCGCCAGTGCAATAGCAATCATGTTCA
CGGGTCTGACCGTCGCGCTTGTCACTGGCGTGCCCATAGGGACGTTGATTGGTCAAAGTTTTGGATGGCGTTCGACATTC
ATCGTTGTTGCAAGTCTGGGTGCTGTAGCAATATTGGGGACTCTTATATTCGTTCCTCACAATATCCCCGCCAGTAAGCC
TCCCAAATTGAGGCAAATTGCCAATGTGCTAACGCATCCTCGCCTTATGCTCGCATATACAATAACCGCTATTGGCTACG
GGGGATCTTTTGTCGCCTTCACGTACCTTGCCCCAATTCTTGAGGAAGTCACGGGTTTCTCAGCGACAGTCGTGAGCGGC
GTTCTACTTTTATACGGCGTGTCCGTTGCAATCGGAAATCTCTACGGTGGAAAGCTTGTAGACCGATATGGTGCGATACC
TGCGCTTCGTTATATATTTTTGGCCCTCTCGATTGTCCTTGTGGCACTTGCATTCACTGCATCAAGTAAGTGGTTAATGC
TCATTACCGTGCTCATATGGGGTGCAGTCGCGTTTGGAAACGTCCCCGGACTTCAATTTTATGCAGTAACACAAGCCGAG
CGTTACGTACCTTCTGCTGTCAATGTGGCTTCTGGGCTGAATATCGCGGCATTCAATTTGGGTATCGCCGGGGGAGCGTC
TATTGGGGGAATGATCGTGGCAAGGGGAAGTTTGATATACACACCTTTGATCGCGGCGATATTCGTATTTTTCGCATTCG
TGTTGACAACGTGGGCGGGATTTCTCGATCGAAGGAAGCAAGCTGTTCATTTGGCCAAATGCTGA

Upstream 100 bases:

>100_bases
CGTTAGGCTCATCAGCACATCCAGAGCGGCACGAACCAATCTTGAAAATAGACTTCTATGCTCTTTCAGAAGTCGATTTT
GGATAACTTGAGAGAATTTA

Downstream 100 bases:

>100_bases
TCCTTCGTGTATGCGGAGTCGCAGCGTCGTTATCTAGAGTCAGATGCGCCCTACGCCAGTGGTGATCATTGGGCCGCCAG
AGGTAATGGCTGCCATAAGG

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPIALLALTICSFAIGTAEFVIVGLIPIVANDLVVSLPSAGLLVSLYAMGVAIGAPLLTAVTGKVHRKVLLIALMALFTA
SNIMAWASPSFETLIAARILTGLAHGVFYSIATIIAAGLVPKEKAASAIAIMFTGLTVALVTGVPIGTLIGQSFGWRSTF
IVVASLGAVAILGTLIFVPHNIPASKPPKLRQIANVLTHPRLMLAYTITAIGYGGSFVAFTYLAPILEEVTGFSATVVSG
VLLLYGVSVAIGNLYGGKLVDRYGAIPALRYIFLALSIVLVALAFTASSKWLMLITVLIWGAVAFGNVPGLQFYAVTQAE
RYVPSAVNVASGLNIAAFNLGIAGGASIGGMIVARGSLIYTPLIAAIFVFFAFVLTTWAGFLDRRKQAVHLAKC

Sequences:

>Translated_394_residues
MPIALLALTICSFAIGTAEFVIVGLIPIVANDLVVSLPSAGLLVSLYAMGVAIGAPLLTAVTGKVHRKVLLIALMALFTA
SNIMAWASPSFETLIAARILTGLAHGVFYSIATIIAAGLVPKEKAASAIAIMFTGLTVALVTGVPIGTLIGQSFGWRSTF
IVVASLGAVAILGTLIFVPHNIPASKPPKLRQIANVLTHPRLMLAYTITAIGYGGSFVAFTYLAPILEEVTGFSATVVSG
VLLLYGVSVAIGNLYGGKLVDRYGAIPALRYIFLALSIVLVALAFTASSKWLMLITVLIWGAVAFGNVPGLQFYAVTQAE
RYVPSAVNVASGLNIAAFNLGIAGGASIGGMIVARGSLIYTPLIAAIFVFFAFVLTTWAGFLDRRKQAVHLAKC
>Mature_393_residues
PIALLALTICSFAIGTAEFVIVGLIPIVANDLVVSLPSAGLLVSLYAMGVAIGAPLLTAVTGKVHRKVLLIALMALFTAS
NIMAWASPSFETLIAARILTGLAHGVFYSIATIIAAGLVPKEKAASAIAIMFTGLTVALVTGVPIGTLIGQSFGWRSTFI
VVASLGAVAILGTLIFVPHNIPASKPPKLRQIANVLTHPRLMLAYTITAIGYGGSFVAFTYLAPILEEVTGFSATVVSGV
LLLYGVSVAIGNLYGGKLVDRYGAIPALRYIFLALSIVLVALAFTASSKWLMLITVLIWGAVAFGNVPGLQFYAVTQAER
YVPSAVNVASGLNIAAFNLGIAGGASIGGMIVARGSLIYTPLIAAIFVFFAFVLTTWAGFLDRRKQAVHLAKC

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=38.8020833333333, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1786595, Length=389, Percent_Identity=30.0771208226221, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1787808, Length=378, Percent_Identity=30.4232804232804, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI145693198, Length=348, Percent_Identity=26.1494252873563, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40982; Mature: 40850

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALLALTICSFAIGTAEFVIVGLIPIVANDLVVSLPSAGLLVSLYAMGVAIGAPLLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH
VTGKVHRKVLLIALMALFTASNIMAWASPSFETLIAARILTGLAHGVFYSIATIIAAGLV
HHHHHHHHHHHHHHHHHHHHHCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PKEKAASAIAIMFTGLTVALVTGVPIGTLIGQSFGWRSTFIVVASLGAVAILGTLIFVPH
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NIPASKPPKLRQIANVLTHPRLMLAYTITAIGYGGSFVAFTYLAPILEEVTGFSATVVSG
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
VLLLYGVSVAIGNLYGGKLVDRYGAIPALRYIFLALSIVLVALAFTASSKWLMLITVLIW
HHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GAVAFGNVPGLQFYAVTQAERYVPSAVNVASGLNIAAFNLGIAGGASIGGMIVARGSLIY
HHHHHCCCCCEEEEEECHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEECCCHHH
TPLIAAIFVFFAFVLTTWAGFLDRRKQAVHLAKC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PIALLALTICSFAIGTAEFVIVGLIPIVANDLVVSLPSAGLLVSLYAMGVAIGAPLLTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH
VTGKVHRKVLLIALMALFTASNIMAWASPSFETLIAARILTGLAHGVFYSIATIIAAGLV
HHHHHHHHHHHHHHHHHHHHHCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PKEKAASAIAIMFTGLTVALVTGVPIGTLIGQSFGWRSTFIVVASLGAVAILGTLIFVPH
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NIPASKPPKLRQIANVLTHPRLMLAYTITAIGYGGSFVAFTYLAPILEEVTGFSATVVSG
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
VLLLYGVSVAIGNLYGGKLVDRYGAIPALRYIFLALSIVLVALAFTASSKWLMLITVLIW
HHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GAVAFGNVPGLQFYAVTQAERYVPSAVNVASGLNIAAFNLGIAGGASIGGMIVARGSLIY
HHHHHCCCCCEEEEEECHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEECCCHHH
TPLIAAIFVFFAFVLTTWAGFLDRRKQAVHLAKC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]