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The map label for this gene is hrpA [H]

Identifier: 120609177

GI number: 120609177

Start: 508687

End: 510738

Strand: Reverse

Name: hrpA [H]

Synonym: Aave_0474

Alternate gene names: 120609177

Gene position: 510738-508687 (Counterclockwise)

Preceding gene: 120609180

Following gene: 120609176

Centisome position: 9.54

GC content: 70.86

Gene sequence:

>2052_bases
ATGCCCAAAATTTCCGCCCCCCGACCACGGCATGCAGCCACCGGCATGACCGGCAGCGTGCTGGCCGGCGCGGTGCTCGC
TCTGGGCATGGCCGGCCTGCCCGCCGCCCAGGCCGCCTCGCTGCGGCTGAGCGCCAGCCTCTCGAGCCTGCCCTCGGCGG
GCGCAGGCGCCGCCCTGGCCGTACCCGCCGCGGAGCTGGCCACGGCCGGCACGGGCGCAGCGCCCTCCAGCCCGGCCGCC
GCGCCCGCCCCGGCCCAGCGCAGCAACACGCTGCAGAAGGCCCCGCCGCGCAAGCACAGCTCCTACCACGCACTGGCAGC
GGCGACCTTCTCGGCAGGCGCCGTCGGCGCAGCCGCCGCCAGCGCGCCCGTTCCGCCCTCCACGGCGCCCGTGGCGATAC
CGAGCATCCCTGCCGCCCGGGCACTGGAGACGCTCGCGCCCGCCTCGCGGGCTTCCGACGCCCTCAACCGCGGCCGCTTC
GTGTACCGCGCCGAGAACAAGCGCCTGACGGACGTGCTGCAGGATTTCGCCGCCAGCCAGGGCATCCCCGCCGTGGTGGC
GGACGGGCTGGACGGCATCGTCAACGCGAACTTCGACGCGAGGCCCCGGGAGTTCCTCGACAGCGTGGCGCGCGCCTACA
ACATGCTCTGGTACCACGACGGCTCGGCGCTGTATTTCTACCCGGGCAAGTCCATCCAGAGCCGCATGTTCCGCATCAAG
GGATTCAGCCGCGACCAGCTCACGGCCATGCTGCAGTCCCTGGACGTGGGTGACAAGCGCTACCCCATCCGCTTCGACGC
GGCCAGCAGCACGATCTATGTGTCCGGCCCGCCCCGGCACGTGGAACTGGTGAGCTCCGCGCTGGAGGCCCTGGATGCCG
GCGTCACGGCCAGCGCCGAGCGCACGGTGCGCGTCTTCTCCCTGCAGTTCGCCTCCGCCAGCGACCGCTCGATGGGCGAC
TCCACGGTGCCCGGCGTGGCCACCACGCTGCGCAAGCTCTACAGCAAGGATGACGGTGAAGGCCTGGCGACGTCCAAGGC
GACGAGCGCCGAGGTGATCGAGAAGATCCAGCAGCAGACGCGCCGCAAGATGAGCGCCTACGTGCCCGTGCCCGCGGCCA
ACCAGTTCCTGCCGCCGCTGCCGCGCGCCAACCCCTCCGAAGGCATGCGTCCGCCCGAGCCCGTGTCCCTGCCCACCGCC
ACCGCCGCGGACAAGGCCGAGGAGGCACCGCCCCGGTTCGAGGCCGACGAGGGCACGAACTCCGTCGTCGTGTACGGCCG
GGCCGACCGGATGGACGAATACGAATCGCTGATCCGCCGCCTGGACCAGAAGCCGCAGCTCGTCGAACTGGAGGCCACGA
TCATCGAGGTCAACTCCGACAGCGTGGATGCGCTGGGCGTGAACTGGTCGCTGCGCGCCGGCACGAGCAGCATCTCCACC
AACCTGCCGGGCCCGAGCACGCCGGCCGCGCTCAGCACCATCGTGCTCGACGCGGGCCGCCACCTGCTGGCCAACGTCAA
CGCGCTGGAAGCGCAGGGCAAGGCGCGCATCCTGTCCAAGCCCTCGGTGCTGGGTGTCGCCAACCGGGCGGCGGTGATGC
GCGAGAAGCGCGTGGCCACCGTGCGCGTCGCGGGGAACCTCGAGGCCAACCTCTTCCAGATCGAGGCCGGCACGCTGCTG
CAGATGACGCCGCAGGTCACCCCGGTGGATGGCAAGAACAACATCAAGCTGAGTCTCTACATCGAGGACGGCGCGTTCGA
GACCAACGTGGTGGACCAGATCCCCCTCGTCAAGAAGACCGAGATCCGCACGGAGGCCCACGTCCGCGAAGGCGAGAGCC
TGCTGATCGGCGGCATCACCGTCGAATCGGAAAACACGCAGGACAACGCGGTCCCGGGCCTGTCCAAGCTGCCGGTCGTG
GGCGGGGTCTTCCGCAACACGGAGCGCCTCACCCGCCGCACCGAGCGCCTGTTCCTGATCACGCCGCGCGTCATCGCGCA
GGACGCACCGACCACCGTTTCCTCGATCTCTCCGGAGGTTCGCAAGCCATGA

Upstream 100 bases:

>100_bases
TTCGCAAGCCGTCGCGCGGCTTCGCATCCCCGCGCACTCCGCCAGGCACCGGCTCCTAAGCTGTCCCCCACACGAAGACA
CCGAACGGAGCGCTCCAGTG

Downstream 100 bases:

>100_bases
AGCAATTTCGTATCCTGACCGGCCAGCACGCCGGGGCCCGCATAGATTTGACTCCAACGCGCCAACACATCAGCGCGGAC
GACACGGCGGACATCCAGCT

Product: YscC/HrcC family type III secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 683; Mature: 682

Protein sequence:

>683_residues
MPKISAPRPRHAATGMTGSVLAGAVLALGMAGLPAAQAASLRLSASLSSLPSAGAGAALAVPAAELATAGTGAAPSSPAA
APAPAQRSNTLQKAPPRKHSSYHALAAATFSAGAVGAAAASAPVPPSTAPVAIPSIPAARALETLAPASRASDALNRGRF
VYRAENKRLTDVLQDFAASQGIPAVVADGLDGIVNANFDARPREFLDSVARAYNMLWYHDGSALYFYPGKSIQSRMFRIK
GFSRDQLTAMLQSLDVGDKRYPIRFDAASSTIYVSGPPRHVELVSSALEALDAGVTASAERTVRVFSLQFASASDRSMGD
STVPGVATTLRKLYSKDDGEGLATSKATSAEVIEKIQQQTRRKMSAYVPVPAANQFLPPLPRANPSEGMRPPEPVSLPTA
TAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEVNSDSVDALGVNWSLRAGTSSIST
NLPGPSTPAALSTIVLDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMREKRVATVRVAGNLEANLFQIEAGTLL
QMTPQVTPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDNAVPGLSKLPVV
GGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP

Sequences:

>Translated_683_residues
MPKISAPRPRHAATGMTGSVLAGAVLALGMAGLPAAQAASLRLSASLSSLPSAGAGAALAVPAAELATAGTGAAPSSPAA
APAPAQRSNTLQKAPPRKHSSYHALAAATFSAGAVGAAAASAPVPPSTAPVAIPSIPAARALETLAPASRASDALNRGRF
VYRAENKRLTDVLQDFAASQGIPAVVADGLDGIVNANFDARPREFLDSVARAYNMLWYHDGSALYFYPGKSIQSRMFRIK
GFSRDQLTAMLQSLDVGDKRYPIRFDAASSTIYVSGPPRHVELVSSALEALDAGVTASAERTVRVFSLQFASASDRSMGD
STVPGVATTLRKLYSKDDGEGLATSKATSAEVIEKIQQQTRRKMSAYVPVPAANQFLPPLPRANPSEGMRPPEPVSLPTA
TAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEVNSDSVDALGVNWSLRAGTSSIST
NLPGPSTPAALSTIVLDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMREKRVATVRVAGNLEANLFQIEAGTLL
QMTPQVTPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDNAVPGLSKLPVV
GGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP
>Mature_682_residues
PKISAPRPRHAATGMTGSVLAGAVLALGMAGLPAAQAASLRLSASLSSLPSAGAGAALAVPAAELATAGTGAAPSSPAAA
PAPAQRSNTLQKAPPRKHSSYHALAAATFSAGAVGAAAASAPVPPSTAPVAIPSIPAARALETLAPASRASDALNRGRFV
YRAENKRLTDVLQDFAASQGIPAVVADGLDGIVNANFDARPREFLDSVARAYNMLWYHDGSALYFYPGKSIQSRMFRIKG
FSRDQLTAMLQSLDVGDKRYPIRFDAASSTIYVSGPPRHVELVSSALEALDAGVTASAERTVRVFSLQFASASDRSMGDS
TVPGVATTLRKLYSKDDGEGLATSKATSAEVIEKIQQQTRRKMSAYVPVPAANQFLPPLPRANPSEGMRPPEPVSLPTAT
AADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEVNSDSVDALGVNWSLRAGTSSISTN
LPGPSTPAALSTIVLDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMREKRVATVRVAGNLEANLFQIEAGTLLQ
MTPQVTPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDNAVPGLSKLPVVG
GVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=283, Percent_Identity=25.7950530035336, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 71858; Mature: 71727

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKISAPRPRHAATGMTGSVLAGAVLALGMAGLPAAQAASLRLSASLSSLPSAGAGAALA
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHEEEEHHHHHCCCCCCCCEEE
VPAAELATAGTGAAPSSPAAAPAPAQRSNTLQKAPPRKHSSYHALAAATFSAGAVGAAAA
CCHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCHHHHHHHHCCCCCCHHCC
SAPVPPSTAPVAIPSIPAARALETLAPASRASDALNRGRFVYRAENKRLTDVLQDFAASQ
CCCCCCCCCCEECCCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCC
GIPAVVADGLDGIVNANFDARPREFLDSVARAYNMLWYHDGSALYFYPGKSIQSRMFRIK
CCCEEECCCCCCEEECCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHHHC
GFSRDQLTAMLQSLDVGDKRYPIRFDAASSTIYVSGPPRHVELVSSALEALDAGVTASAE
CCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
RTVRVFSLQFASASDRSMGDSTVPGVATTLRKLYSKDDGEGLATSKATSAEVIEKIQQQT
CEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
RRKMSAYVPVPAANQFLPPLPRANPSEGMRPPEPVSLPTATAADKAEEAPPRFEADEGTN
HHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
SVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEVNSDSVDALGVNWSLRAGTSSIST
EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEECCEEEECCCCCCCC
NLPGPSTPAALSTIVLDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMREKRVAT
CCCCCCCCHHHHHHHHHCCHHHHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEE
VRVAGNLEANLFQIEAGTLLQMTPQVTPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKT
EEEECCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCHHCCCCCCHH
EIRTEAHVREGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFLI
HHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEE
TPRVIAQDAPTTVSSISPEVRKP
CCHHHHCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
PKISAPRPRHAATGMTGSVLAGAVLALGMAGLPAAQAASLRLSASLSSLPSAGAGAALA
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHEEEEHHHHHCCCCCCCCEEE
VPAAELATAGTGAAPSSPAAAPAPAQRSNTLQKAPPRKHSSYHALAAATFSAGAVGAAAA
CCHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCHHHHHHHHCCCCCCHHCC
SAPVPPSTAPVAIPSIPAARALETLAPASRASDALNRGRFVYRAENKRLTDVLQDFAASQ
CCCCCCCCCCEECCCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCC
GIPAVVADGLDGIVNANFDARPREFLDSVARAYNMLWYHDGSALYFYPGKSIQSRMFRIK
CCCEEECCCCCCEEECCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHHHC
GFSRDQLTAMLQSLDVGDKRYPIRFDAASSTIYVSGPPRHVELVSSALEALDAGVTASAE
CCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
RTVRVFSLQFASASDRSMGDSTVPGVATTLRKLYSKDDGEGLATSKATSAEVIEKIQQQT
CEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
RRKMSAYVPVPAANQFLPPLPRANPSEGMRPPEPVSLPTATAADKAEEAPPRFEADEGTN
HHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
SVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEVNSDSVDALGVNWSLRAGTSSIST
EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEECCEEEECCCCCCCC
NLPGPSTPAALSTIVLDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMREKRVAT
CCCCCCCCHHHHHHHHHCCHHHHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEE
VRVAGNLEANLFQIEAGTLLQMTPQVTPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKT
EEEECCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCHHCCCCCCHH
EIRTEAHVREGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFLI
HHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEE
TPRVIAQDAPTTVSSISPEVRKP
CCHHHHCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472716; 7623665; 11823852 [H]