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The map label for this gene is hrpB3 [H]

Identifier: 120609169

GI number: 120609169

Start: 504260

End: 505123

Strand: Reverse

Name: hrpB3 [H]

Synonym: Aave_0466

Alternate gene names: 120609169

Gene position: 505123-504260 (Counterclockwise)

Preceding gene: 120609170

Following gene: 120609168

Centisome position: 9.44

GC content: 70.83

Gene sequence:

>864_bases
ATGACGCATGACACGCCGTATCCGGCCCGGGGCTTCTCGCCGCTGCGCCGGTGGCTCGCTCCCCTCGTCCTGCTGCTGGC
GCTCGTCGGCTGCAAGGACGACCTCTATACCAAGCAGACCGAGGCAGACGCCAACGACATGGTGGCAGCCCTGCTCGAAA
GCGGCATCGACGCGGGCAAGGCGACCTCCGACGCCGGCAAGACCTGGAACGTGCAGGTGGAAAAGAGCGACGTGGTGCGC
TCGCTCGCCGTGCTGCGCTCCTACGGGCTGCCGCGCGAGCGCCATGCCACCCTGGGCGAGATGTTCAAGAAGGAAGGCCT
GATCTCCACCCCGACGGAAGAGCGGGTGCGCTTCATCTATGGCGTCGCCCAGCAGCTGGAAGCCACGCTGTCGCAGATCG
ACGGCGTGGTCACCGCGCGGGTGCAGATCGTGCTGCCCAACAACGACCCGCTCGCCTCCACCGTCAAGCCCGCGAGCGCC
TCGGTGTTCATCAAGTACCGCGAGAGCGCGAACATCGCCGGACTGACGGCGGGCATCAAGAACATGGTGGCGCGCAGCGT
CGAAGGCCTGACGTACGAGAACGTCACCGTCACGCTCGTGCCGGGCATGCCCATCGGCCCCGCGCCGGAGAAGGAGGCCT
CGCGCGCCGGCCTCTGGGCCGCGCTGGCAGCCGCCGTGCTGCTGGTGCTGGGCGGCGCGGCGGGATGGATCGCCTGGAAG
CGGCCGGCCTGGCTGCCCGCCGGCCTGCGCCGCAAGCCGGAAGCCGCCGGCGGCGAACTCGCCGCGGACGCATCCGCCGC
ATCCCCCGCTTCCGCGGCACCCCTGCCGTCGGCCCCCGCCATGGCCAAGGGACTCGCGGGATGA

Upstream 100 bases:

>100_bases
GTCCGGCATGCAGTTCCAGTTCCATGCCATGGTCTATCTGGCCCAGAGCGGCAAGAGCGGCCTGCAGACGCTGATGCGCA
ACCAGTGAGCGGAGGCCACC

Downstream 100 bases:

>100_bases
GCCGCGCACGCGACCTCGCCCGGCTGGCCTGTGAACTGCAGGCCCGCATCGATGCGCTGCCCGACCATGTCGATCCCAGC
TGGCTGCGGCCTGCCGACTC

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTHDTPYPARGFSPLRRWLAPLVLLLALVGCKDDLYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVR
SLAVLRSYGLPRERHATLGEMFKKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLASTVKPASA
SVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVTLVPGMPIGPAPEKEASRAGLWAALAAAVLLVLGGAAGWIAWK
RPAWLPAGLRRKPEAAGGELAADASAASPASAAPLPSAPAMAKGLAG

Sequences:

>Translated_287_residues
MTHDTPYPARGFSPLRRWLAPLVLLLALVGCKDDLYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVR
SLAVLRSYGLPRERHATLGEMFKKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLASTVKPASA
SVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVTLVPGMPIGPAPEKEASRAGLWAALAAAVLLVLGGAAGWIAWK
RPAWLPAGLRRKPEAAGGELAADASAASPASAAPLPSAPAMAKGLAG
>Mature_286_residues
THDTPYPARGFSPLRRWLAPLVLLLALVGCKDDLYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRS
LAVLRSYGLPRERHATLGEMFKKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLASTVKPASAS
VFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVTLVPGMPIGPAPEKEASRAGLWAALAAAVLLVLGGAAGWIAWKR
PAWLPAGLRRKPEAAGGELAADASAASPASAAPLPSAPAMAKGLAG

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 30073; Mature: 29942

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHDTPYPARGFSPLRRWLAPLVLLLALVGCKDDLYTKQTEADANDMVAALLESGIDAGK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCC
ATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRERHATLGEMFKKEGLISTPTEERVRFIY
CCCCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GVAQQLEATLSQIDGVVTARVQIVLPNNDPLASTVKPASASVFIKYRESANIAGLTAGIK
HHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
NMVARSVEGLTYENVTVTLVPGMPIGPAPEKEASRAGLWAALAAAVLLVLGGAAGWIAWK
HHHHHHHCCCEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEC
RPAWLPAGLRRKPEAAGGELAADASAASPASAAPLPSAPAMAKGLAG
CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
THDTPYPARGFSPLRRWLAPLVLLLALVGCKDDLYTKQTEADANDMVAALLESGIDAGK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCC
ATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRERHATLGEMFKKEGLISTPTEERVRFIY
CCCCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GVAQQLEATLSQIDGVVTARVQIVLPNNDPLASTVKPASASVFIKYRESANIAGLTAGIK
HHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
NMVARSVEGLTYENVTVTLVPGMPIGPAPEKEASRAGLWAALAAAVLLVLGGAAGWIAWK
HHHHHHHCCCEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEC
RPAWLPAGLRRKPEAAGGELAADASAASPASAAPLPSAPAMAKGLAG
CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]