| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120609144
Identifier: 120609144
GI number: 120609144
Start: 478259
End: 478858
Strand: Reverse
Name: 120609144
Synonym: Aave_0441
Alternate gene names: NA
Gene position: 478858-478259 (Counterclockwise)
Preceding gene: 120609147
Following gene: 120609142
Centisome position: 8.95
GC content: 72.83
Gene sequence:
>600_bases ATGACACTTCGGCAACGCGGCCTCGCCTGGGCGCTCGCCGGGCTCATCGCCTGCGGCGCCGCGCCCGCGGGCGCGCAGAC CGCCGCCACCGTGGCCGGCGTGGCCTTCGAGCCGCGGGTCACGCTGGCGGACGTTCCCCTGGCGCTCAACGGCGCGGGCG TGCGCTACAAGGCCGTCTTCAAGGTCTATGCGGCCGGGCTGTACCTGGAGCGCCACGCCGCCACGCTGCGGGACGTGGTG GCGCTGCCCGGCCCCAAGCGGCTGTCCGTCACCATGCTGCGCGACATCGACTCGACGGAGCTGGGCAAGCTGTTCGCGCG CGGCATCGAGGACAACCTGGACAAGGCGGCGTTCTCCCGCCTCGCGCCGGGCGTGCTGCGCATGGGCGAGATCTTCGCCG CGCACCGCCGGCTGGCGGCAGGCGACCGCTTCACCGTGGACTGGCTGCCCGGCACCGGCACGGTCATCACCGTGAAAGGC GTGCCGCAGGGCGAACCTTTCCACGAGCCCGAATTCTTCGGGGCGCTGATGGCCATCTGGCTCGGTCCGCAGCCCGCGGA CTGGAAGCTCAAGGACGCGCTGCTCGGCAAGGCCGGCTGA
Upstream 100 bases:
>100_bases GCAAAGTGTAGCAAAGCGGCCTGCGCGAAAACCCTGTTGCGCTGCCCGCGGCAAGGCGCCGAGAATAAAAAGAACGATCG TGCTTTTTTAGGGAGTCGCC
Downstream 100 bases:
>100_bases ACGCCGGCCCGCCGCGGCACGGCCTCAGCCCGCGCACAGCGACTGCAGGCTGTCCACGTGCGCGTCCGCGTCCACCTGCC GCGCGGGCTGGCCGTGGTTG
Product: putative lipoprotein transmembrane
Products: NA
Alternate protein names: Chalcone Isomerase; Transmembrane; Lipoprotein; Exported Protein
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MTLRQRGLAWALAGLIACGAAPAGAQTAATVAGVAFEPRVTLADVPLALNGAGVRYKAVFKVYAAGLYLERHAATLRDVV ALPGPKRLSVTMLRDIDSTELGKLFARGIEDNLDKAAFSRLAPGVLRMGEIFAAHRRLAAGDRFTVDWLPGTGTVITVKG VPQGEPFHEPEFFGALMAIWLGPQPADWKLKDALLGKAG
Sequences:
>Translated_199_residues MTLRQRGLAWALAGLIACGAAPAGAQTAATVAGVAFEPRVTLADVPLALNGAGVRYKAVFKVYAAGLYLERHAATLRDVV ALPGPKRLSVTMLRDIDSTELGKLFARGIEDNLDKAAFSRLAPGVLRMGEIFAAHRRLAAGDRFTVDWLPGTGTVITVKG VPQGEPFHEPEFFGALMAIWLGPQPADWKLKDALLGKAG >Mature_198_residues TLRQRGLAWALAGLIACGAAPAGAQTAATVAGVAFEPRVTLADVPLALNGAGVRYKAVFKVYAAGLYLERHAATLRDVVA LPGPKRLSVTMLRDIDSTELGKLFARGIEDNLDKAAFSRLAPGVLRMGEIFAAHRRLAAGDRFTVDWLPGTGTVITVKGV PQGEPFHEPEFFGALMAIWLGPQPADWKLKDALLGKAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21087; Mature: 20956
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRQRGLAWALAGLIACGAAPAGAQTAATVAGVAFEPRVTLADVPLALNGAGVRYKAVF CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCEEECCCEEEECCCEEECCCCCHHHHHH KVYAAGLYLERHAATLRDVVALPGPKRLSVTMLRDIDSTELGKLFARGIEDNLDKAAFSR HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LAPGVLRMGEIFAAHRRLAAGDRFTVDWLPGTGTVITVKGVPQGEPFHEPEFFGALMAIW HCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHH LGPQPADWKLKDALLGKAG CCCCCCCCCHHHHHCCCCC >Mature Secondary Structure TLRQRGLAWALAGLIACGAAPAGAQTAATVAGVAFEPRVTLADVPLALNGAGVRYKAVF CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCEEECCCEEEECCCEEECCCCCHHHHHH KVYAAGLYLERHAATLRDVVALPGPKRLSVTMLRDIDSTELGKLFARGIEDNLDKAAFSR HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LAPGVLRMGEIFAAHRRLAAGDRFTVDWLPGTGTVITVKGVPQGEPFHEPEFFGALMAIW HCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHH LGPQPADWKLKDALLGKAG CCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA