| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120608941
Identifier: 120608941
GI number: 120608941
Start: 266244
End: 266972
Strand: Reverse
Name: 120608941
Synonym: Aave_0238
Alternate gene names: NA
Gene position: 266972-266244 (Counterclockwise)
Preceding gene: 120608942
Following gene: 120608940
Centisome position: 4.99
GC content: 53.36
Gene sequence:
>729_bases ATGCACTTCATCTCCAACGACAACCTTGCGACTTCCTATGTGAAAGCCATTTCACTCATTGGATTCCTTGCAATGCAAAC CGCTCACGCCGAGCCCAGCCAGCCAAAAACAACCAAAGAACCAAGACAAGTCACCTCCTGCGGCATCAGCTTCAACCTTC CCCGCCATCTGAAAATCACACCACCCAGAAGAACCGTCAATACGGATGGCATAGAAGAATGCGAATTCCAAGTGGAATAT GCCAAATGCCGTGCCTTCGAGGGGACCTGCAGAGAGGGAGATATCCGCTATACGGATTCAGAGAAAAATGAATGCGAGCG GCGCCCCATGGACGGGCCCGCCAGTCAGATTCTGGTGGTCAAGACAAACTTCAACAAAGACAAGAAGACGGTCGGGGCCT TCACCTATAAAGAAAACAAGTGGGAAATCGCTGAAGGCGATTACTACTACTCAGATGAAGTGCAACTCGGAAACCATTAT GGCCATATGTCTCTTGCTGCCGCCGCGAATTCCAGGGATTTTTGGCAGAGATGGGGTGAATCCGTGGGGTATCAGCTCAT CGAATACTGCTGCACCATTGGCACGGAACTGGTCTTGATCCAACTCTCCAGCGACATCGCCGTGTACATGGCTCCTCCCC CCCGCGACACGAAAGACGGCGATGAATGCGAAATCTTCTGCCGCAGCGTCCGTCCGGCAGAGCCCCGGCAGCGCACTGCT GCCCGCTGA
Upstream 100 bases:
>100_bases TTCGAGTATGCAACAGTACTCAGAAAAATCCCTGCGCCATCCGGCCTGACCTTACCAAAGTCCGACTGATTATTGCAATA TCACTGACAGGGGGAGGCCG
Downstream 100 bases:
>100_bases CCGAAACACCCCAGCCATGGCCTCTCTCAGCCTCCCCCGCTTCATCGCCCACCTGCGCAGCGACGCTGCCAACCTTTACG CCCTGATCGACTCCGCCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MHFISNDNLATSYVKAISLIGFLAMQTAHAEPSQPKTTKEPRQVTSCGISFNLPRHLKITPPRRTVNTDGIEECEFQVEY AKCRAFEGTCREGDIRYTDSEKNECERRPMDGPASQILVVKTNFNKDKKTVGAFTYKENKWEIAEGDYYYSDEVQLGNHY GHMSLAAAANSRDFWQRWGESVGYQLIEYCCTIGTELVLIQLSSDIAVYMAPPPRDTKDGDECEIFCRSVRPAEPRQRTA AR
Sequences:
>Translated_242_residues MHFISNDNLATSYVKAISLIGFLAMQTAHAEPSQPKTTKEPRQVTSCGISFNLPRHLKITPPRRTVNTDGIEECEFQVEY AKCRAFEGTCREGDIRYTDSEKNECERRPMDGPASQILVVKTNFNKDKKTVGAFTYKENKWEIAEGDYYYSDEVQLGNHY GHMSLAAAANSRDFWQRWGESVGYQLIEYCCTIGTELVLIQLSSDIAVYMAPPPRDTKDGDECEIFCRSVRPAEPRQRTA AR >Mature_242_residues MHFISNDNLATSYVKAISLIGFLAMQTAHAEPSQPKTTKEPRQVTSCGISFNLPRHLKITPPRRTVNTDGIEECEFQVEY AKCRAFEGTCREGDIRYTDSEKNECERRPMDGPASQILVVKTNFNKDKKTVGAFTYKENKWEIAEGDYYYSDEVQLGNHY GHMSLAAAANSRDFWQRWGESVGYQLIEYCCTIGTELVLIQLSSDIAVYMAPPPRDTKDGDECEIFCRSVRPAEPRQRTA AR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27486; Mature: 27486
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFISNDNLATSYVKAISLIGFLAMQTAHAEPSQPKTTKEPRQVTSCGISFNLPRHLKIT CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCEEECCCCCEEEC PPRRTVNTDGIEECEFQVEYAKCRAFEGTCREGDIRYTDSEKNECERRPMDGPASQILVV CCCCCCCCCCCCHHHEEEEHHHHCCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCEEEEE KTNFNKDKKTVGAFTYKENKWEIAEGDYYYSDEVQLGNHYGHMSLAAAANSRDFWQRWGE EECCCCCCCEEEEEEEECCEEEEECCCEEECCCEEECCCCCCEEEEECCCCHHHHHHHHH SVGYQLIEYCCTIGTELVLIQLSSDIAVYMAPPPRDTKDGDECEIFCRSVRPAEPRQRTA HHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCHHHCC AR CC >Mature Secondary Structure MHFISNDNLATSYVKAISLIGFLAMQTAHAEPSQPKTTKEPRQVTSCGISFNLPRHLKIT CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCEEECCCCCEEEC PPRRTVNTDGIEECEFQVEYAKCRAFEGTCREGDIRYTDSEKNECERRPMDGPASQILVV CCCCCCCCCCCCHHHEEEEHHHHCCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCEEEEE KTNFNKDKKTVGAFTYKENKWEIAEGDYYYSDEVQLGNHYGHMSLAAAANSRDFWQRWGE EECCCCCCCEEEEEEEECCEEEEECCCEEECCCEEECCCCCCEEEEECCCCHHHHHHHHH SVGYQLIEYCCTIGTELVLIQLSSDIAVYMAPPPRDTKDGDECEIFCRSVRPAEPRQRTA HHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCHHHCC AR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA