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The map label for this gene is yhjC [H]

Identifier: 120608930

GI number: 120608930

Start: 250686

End: 251642

Strand: Reverse

Name: yhjC [H]

Synonym: Aave_0225

Alternate gene names: 120608930

Gene position: 251642-250686 (Counterclockwise)

Preceding gene: 120608931

Following gene: 120608929

Centisome position: 4.7

GC content: 71.79

Gene sequence:

>957_bases
ATGAATCCCTTCGACCGCATGCATACCTTCGTCCGCGTGGCCGAACTCGCCAGCTTCACCCAGGCGGCCGAAGCGCTCGG
CATCCCCAAGGCCAGCGCTTCCACCGCCGTGCAGCAGCTGGAAACCCAGCTCGGCACGCGCCTGCTGCACCGCACCACCC
GGCGGGTGCAACTCACGCAGGACGGGCAGGCCTACTACGAGCGCTGCAAGGACCTGCTGGCCGATGTCGATGAACTGCAG
TCCATGTTCCAGCACGCCGACGGCGAGGGCGCGGGGGGCGGCGGCCTGCGCGGGCGCGTGCGCATCGACATGTCCACCGG
CATGGCGCGCAACGTGGTCGTGCCGCGCCTGCCCGAACTGCTGGCCCGCCACTCGGGGCTGGAGGTGGAACTGAGCAGCA
CCGAACGCCGCGTGGACGTGGTGCGCGAGGGCTTCGACTGCGTGCTGCGCACCGGCGCCGTGGTGGATGCCAGCCTCGTC
GCGCGACCGCTGGGCCCCGCGCGGCTGGTCAACTGCGCCAGCCCCGCCTACCTGCGCGCGCACGGCACGCCCCAAACGCT
GGAGGACCTGGGCGACCACCGGCTGGTGCATTTCGTGAACACCCTCGGCGCGCGCTCCGGCGGCTTCGAGGCCATGGTGG
ACGGCACCCTGGCGGCCATCCCCATGCAGGGAGCCCTCACGGTGAACAACGCCGAAGCCTACATCGCCGGCTGCCTGGCG
GGGTTGGGAATCATCCAGGTGCCGCGCCTGGGCGTGGTGGACCTGCTGGCGCAGGGCGCACTGGTGGAGGTGCTGCCGCA
GCACGCCGCGCCACCGATGCCGCTCACGCTGATGTACGCCACCCGCCGCAATCTGCCGCGGCGCGTGCGGGCGGTGATGG
ATTGGCTGGCGGAGGTGGTGGGGGAGCACCTGGGGCAGGACGCGGCGGCGACAAACGGGGAAGCAGCGCCACCGTGA

Upstream 100 bases:

>100_bases
GTGAAAGAGGGAACGAAGAAGCGATGGACTGCAGTCTATTGATCGACCCATTTGCCATAAATCACGCAAAATCGATCACA
TCGTTCATATCAAAAGAACA

Downstream 100 bases:

>100_bases
GATGCCTGCGTCGGACCACCGGCCGGCAGGTTTTCCAAGTGACGATAGACGGGATTCGCGCACATGTCCTGAGGCCTGAA
ACCATCCACCCTCCGGGTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNPFDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQAYYERCKDLLADVDELQ
SMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPELLARHSGLEVELSSTERRVDVVREGFDCVLRTGAVVDASLV
ARPLGPARLVNCASPAYLRAHGTPQTLEDLGDHRLVHFVNTLGARSGGFEAMVDGTLAAIPMQGALTVNNAEAYIAGCLA
GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAEVVGEHLGQDAAATNGEAAPP

Sequences:

>Translated_318_residues
MNPFDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQAYYERCKDLLADVDELQ
SMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPELLARHSGLEVELSSTERRVDVVREGFDCVLRTGAVVDASLV
ARPLGPARLVNCASPAYLRAHGTPQTLEDLGDHRLVHFVNTLGARSGGFEAMVDGTLAAIPMQGALTVNNAEAYIAGCLA
GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAEVVGEHLGQDAAATNGEAAPP
>Mature_318_residues
MNPFDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQAYYERCKDLLADVDELQ
SMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPELLARHSGLEVELSSTERRVDVVREGFDCVLRTGAVVDASLV
ARPLGPARLVNCASPAYLRAHGTPQTLEDLGDHRLVHFVNTLGARSGGFEAMVDGTLAAIPMQGALTVNNAEAYIAGCLA
GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAEVVGEHLGQDAAATNGEAAPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=46.3815789473684, Blast_Score=280, Evalue=8e-77,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=30.9210526315789, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=30.976430976431, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=32.2368421052632, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=303, Percent_Identity=27.3927392739274, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.681660899654, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=277, Percent_Identity=27.0758122743682, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789173, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788706, Length=307, Percent_Identity=24.4299674267101, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=305, Percent_Identity=26.5573770491803, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34032; Mature: 34032

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPFDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGQAYYERCKDLLADVDELQSMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPEL
CCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHCCCCHHHHHH
LARHSGLEVELSSTERRVDVVREGFDCVLRTGAVVDASLVARPLGPARLVNCASPAYLRA
HHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCEEEE
HGTPQTLEDLGDHRLVHFVNTLGARSGGFEAMVDGTLAAIPMQGALTVNNAEAYIAGCLA
CCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCCEEEECCHHHHHHHHHH
GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAEVV
HCCHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHH
GEHLGQDAAATNGEAAPP
HHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPFDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGQAYYERCKDLLADVDELQSMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPEL
CCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHCCCCHHHHHH
LARHSGLEVELSSTERRVDVVREGFDCVLRTGAVVDASLVARPLGPARLVNCASPAYLRA
HHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCEEEE
HGTPQTLEDLGDHRLVHFVNTLGARSGGFEAMVDGTLAAIPMQGALTVNNAEAYIAGCLA
CCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCCEEEECCHHHHHHHHHH
GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAEVV
HCCHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHH
GEHLGQDAAATNGEAAPP
HHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]