| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120608877
Identifier: 120608877
GI number: 120608877
Start: 188452
End: 189669
Strand: Reverse
Name: 120608877
Synonym: Aave_0169
Alternate gene names: NA
Gene position: 189669-188452 (Counterclockwise)
Preceding gene: 120608878
Following gene: 120608876
Centisome position: 3.54
GC content: 73.81
Gene sequence:
>1218_bases ATGGCGTTCTTCATGGCGGACGTGCGCGACGGGCTCGGTCCGTTCCTCGCCACCTACCTGCAGACCCAGCGCATCGACCA GACCATGATCGGCATCGTGATGTCGGCCGGCGGCCTGGCCGGCATGCTGGCCACCCCCGTGGCCGGCGCCTGGGCGGACC GCATCCGCGCCAAGCGGATGCTGGTCGCGATCGCCGCGCTGGCCATCCTGGGCGCGAGCGCGGTCGCCTTCGGCACCCGG TCGCCGGGCATGCTGGTGCTGTCGCAGGTTCTCACCGGCGTGGCCGGCGCGCTGCTGGCCGCCGGCCTCGCCGCGCTCAC GCTGGGCCTGGCCCGCCGCCAGGGCCTGCGCCACCAGACCGGCCGCAACGAGGCCTACAGCCATGCCGGCAACATCGTTT CCGCGCTGGGCGCGGCGGCTTTCGCGCACTGGCTGGGCGCGCCCTGGATGCTGGTCGTCATGACGGCCATGGCCGTGGGC GCCCTGGCCTGCCTGATGGCCATCCGCGACCGCGACATCGACCAGGTGGCGGCCCGCGGCGGCGAGCCGGCCCCGGAGGC ACGCACGGACGCGGCACCGGCTGCCGCATCCGCCGGCGCCCCGGCCGCCCCCGAGGGCTGGCGCGCCTTCCTGTCGCACC GCGCGCTCTGGCTTTTCGGGCTGGCCTGCGCGCTCTTCCACCTGGGCAACGCGGCCATGCTGCCGCTGCTCAACCAGCGG CTGGCGGCCACCGTGCCCGACTCCGCGCCGCTCCTGTGGACCGGCATCGCCATCGTCGTCGCCCAGCTCACCATGGTGCC GGTGGCGCTGTGGGTGTCGCGCAGCCGCCGCCTCGACCTGCAGGTATTCATCTACATCGCCATCCTGGCGCTGCCCGTGC GCGGCATCCTGGCCTGGGCCATTCCCGATGCCTGGGCCAACATTCCCGTGCAGATCCTCGACGGCCTCGCAGCCGGCGCC CTGGGCGTGGCCACTCCCCTGATGGTGGAGCGCTACGTGCGCGGCAGCGGCCGCTACAACACCGCCCTCGGGCTGGTCAT GACACTGCAGGGCGTCGGTGCCTCGCTGAGTCCGGCCATCGCCAACAGCGTGGTGGGTGCGCAGGGGCATTTCGGGCTGG CCTTCGCCGTGCTCGCGGGCTGCGCGATGCTGGCGCTGCCGGTCTTCTGGTTCGCGCAGCGGCAGGCCGAACGGCATCCC GCACCGCATCCCGCCTAG
Upstream 100 bases:
>100_bases GCCCTCCCCGCTGTTCGGAGGCCCGGCCCCCCAGGAAAAACGGCCTGCCGGCGCAAGCACGCCGGTGGCCGCCGGGGCCT CCCTCACGGCCCTGGCCTGG
Downstream 100 bases:
>100_bases GGGAAGCGGCTACCGCCAGCTGGGCACGCAGGTGCGCGTGGCCACCTGTGGCGGCATGACCGGAACGACCAGTACCGGGG CCCGGGACATGCCCCGCCAG
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MAFFMADVRDGLGPFLATYLQTQRIDQTMIGIVMSAGGLAGMLATPVAGAWADRIRAKRMLVAIAALAILGASAVAFGTR SPGMLVLSQVLTGVAGALLAAGLAALTLGLARRQGLRHQTGRNEAYSHAGNIVSALGAAAFAHWLGAPWMLVVMTAMAVG ALACLMAIRDRDIDQVAARGGEPAPEARTDAAPAAASAGAPAAPEGWRAFLSHRALWLFGLACALFHLGNAAMLPLLNQR LAATVPDSAPLLWTGIAIVVAQLTMVPVALWVSRSRRLDLQVFIYIAILALPVRGILAWAIPDAWANIPVQILDGLAAGA LGVATPLMVERYVRGSGRYNTALGLVMTLQGVGASLSPAIANSVVGAQGHFGLAFAVLAGCAMLALPVFWFAQRQAERHP APHPA
Sequences:
>Translated_405_residues MAFFMADVRDGLGPFLATYLQTQRIDQTMIGIVMSAGGLAGMLATPVAGAWADRIRAKRMLVAIAALAILGASAVAFGTR SPGMLVLSQVLTGVAGALLAAGLAALTLGLARRQGLRHQTGRNEAYSHAGNIVSALGAAAFAHWLGAPWMLVVMTAMAVG ALACLMAIRDRDIDQVAARGGEPAPEARTDAAPAAASAGAPAAPEGWRAFLSHRALWLFGLACALFHLGNAAMLPLLNQR LAATVPDSAPLLWTGIAIVVAQLTMVPVALWVSRSRRLDLQVFIYIAILALPVRGILAWAIPDAWANIPVQILDGLAAGA LGVATPLMVERYVRGSGRYNTALGLVMTLQGVGASLSPAIANSVVGAQGHFGLAFAVLAGCAMLALPVFWFAQRQAERHP APHPA >Mature_404_residues AFFMADVRDGLGPFLATYLQTQRIDQTMIGIVMSAGGLAGMLATPVAGAWADRIRAKRMLVAIAALAILGASAVAFGTRS PGMLVLSQVLTGVAGALLAAGLAALTLGLARRQGLRHQTGRNEAYSHAGNIVSALGAAAFAHWLGAPWMLVVMTAMAVGA LACLMAIRDRDIDQVAARGGEPAPEARTDAAPAAASAGAPAAPEGWRAFLSHRALWLFGLACALFHLGNAAMLPLLNQRL AATVPDSAPLLWTGIAIVVAQLTMVPVALWVSRSRRLDLQVFIYIAILALPVRGILAWAIPDAWANIPVQILDGLAAGAL GVATPLMVERYVRGSGRYNTALGLVMTLQGVGASLSPAIANSVVGAQGHFGLAFAVLAGCAMLALPVFWFAQRQAERHPA PHPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41970; Mature: 41839
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFFMADVRDGLGPFLATYLQTQRIDQTMIGIVMSAGGLAGMLATPVAGAWADRIRAKRM CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LVAIAALAILGASAVAFGTRSPGMLVLSQVLTGVAGALLAAGLAALTLGLARRQGLRHQT HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC GRNEAYSHAGNIVSALGAAAFAHWLGAPWMLVVMTAMAVGALACLMAIRDRDIDQVAARG CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC GEPAPEARTDAAPAAASAGAPAAPEGWRAFLSHRALWLFGLACALFHLGNAAMLPLLNQR CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LAATVPDSAPLLWTGIAIVVAQLTMVPVALWVSRSRRLDLQVFIYIAILALPVRGILAWA HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH IPDAWANIPVQILDGLAAGALGVATPLMVERYVRGSGRYNTALGLVMTLQGVGASLSPAI CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH ANSVVGAQGHFGLAFAVLAGCAMLALPVFWFAQRQAERHPAPHPA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AFFMADVRDGLGPFLATYLQTQRIDQTMIGIVMSAGGLAGMLATPVAGAWADRIRAKRM CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LVAIAALAILGASAVAFGTRSPGMLVLSQVLTGVAGALLAAGLAALTLGLARRQGLRHQT HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC GRNEAYSHAGNIVSALGAAAFAHWLGAPWMLVVMTAMAVGALACLMAIRDRDIDQVAARG CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC GEPAPEARTDAAPAAASAGAPAAPEGWRAFLSHRALWLFGLACALFHLGNAAMLPLLNQR CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LAATVPDSAPLLWTGIAIVVAQLTMVPVALWVSRSRRLDLQVFIYIAILALPVRGILAWA HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH IPDAWANIPVQILDGLAAGALGVATPLMVERYVRGSGRYNTALGLVMTLQGVGASLSPAI CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH ANSVVGAQGHFGLAFAVLAGCAMLALPVFWFAQRQAERHPAPHPA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]