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The map label for this gene is ycdC [C]

Identifier: 120608817

GI number: 120608817

Start: 115561

End: 116184

Strand: Reverse

Name: ycdC [C]

Synonym: Aave_0109

Alternate gene names: 120608817

Gene position: 116184-115561 (Counterclockwise)

Preceding gene: 120608819

Following gene: 120608816

Centisome position: 2.17

GC content: 68.27

Gene sequence:

>624_bases
ATGACAGCAGCCGACGCGCTCCCCCGCCTGACCGACCGCAAGCGCGAAGCCATCGTGCAGGCGGCCATCGCGGAGTTCCG
CGAAAGCGGTTTCTCCGGCACCAGCATGGACCGTGTGGCCGCCGCCGCCGGTGTATCGAAGCGCACGGTCTACAACCATT
TCCCCAGCAAGGACGAGCTGTTCTCCGCCATCCTCGACCAGCTCTGGAACCGCAGCCACGCGCTGCCCGATCTGCGCCAC
GACGCCGACCGGCCGCTGCGGCAGCAGTTGCTGGAGCTGATCGGCGGCAAGATGCAGCTCTTCAACGATCCGAGCTTCAT
GGACCTCTCGCGCGTGGTGATGGCCGAGATGCTGCACACGCCCGAACGCGCCAAGGCGATGGCCGAGCGCCTTTCCTCCA
GGGAGGAAGGCCTGCCCGCCTGGATCCGCGACGCGCAGGAAGCGGGCCGGCTGCGCGCCGATGCCGATCCGCTTTATGCC
GCGCACCTGCTCATGGGCCAGCTCAAGACGCATGCCTTCTGGCCGCAACTCATCCTGGGCCAGCCGCCGCTGGACGCTGC
GCAGCAGGCCCAGGTGCTGGCCGACGCGGTGGACATGTTCCTGGGCTTTTACGCCCGCGGCTGA

Upstream 100 bases:

>100_bases
CAGTGGGGAAAAGGAAATGGGAAAAAGACGCACTACGAAGTGCACTGCACAGTGTAGTGTTGTTTTGAGAAAAGTAAACC
GTGCGGTGTAAAATCTCCCC

Downstream 100 bases:

>100_bases
GGCGGCGGCGCGGGGCCCAGCACGCGGCGCGCCGCCTCCATCGCGCTGCGGGCCAGGCGCTCCAGCCGCGGTGGCTGCTG
CCGCCAGCCGTGCCAGAACA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulator TetR; TetR-Type Transcriptional Regulator; Bacterial Regulatory Protein

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTAADALPRLTDRKREAIVQAAIAEFRESGFSGTSMDRVAAAAGVSKRTVYNHFPSKDELFSAILDQLWNRSHALPDLRH
DADRPLRQQLLELIGGKMQLFNDPSFMDLSRVVMAEMLHTPERAKAMAERLSSREEGLPAWIRDAQEAGRLRADADPLYA
AHLLMGQLKTHAFWPQLILGQPPLDAAQQAQVLADAVDMFLGFYARG

Sequences:

>Translated_207_residues
MTAADALPRLTDRKREAIVQAAIAEFRESGFSGTSMDRVAAAAGVSKRTVYNHFPSKDELFSAILDQLWNRSHALPDLRH
DADRPLRQQLLELIGGKMQLFNDPSFMDLSRVVMAEMLHTPERAKAMAERLSSREEGLPAWIRDAQEAGRLRADADPLYA
AHLLMGQLKTHAFWPQLILGQPPLDAAQQAQVLADAVDMFLGFYARG
>Mature_206_residues
TAADALPRLTDRKREAIVQAAIAEFRESGFSGTSMDRVAAAAGVSKRTVYNHFPSKDELFSAILDQLWNRSHALPDLRHD
ADRPLRQQLLELIGGKMQLFNDPSFMDLSRVVMAEMLHTPERAKAMAERLSSREEGLPAWIRDAQEAGRLRADADPLYAA
HLLMGQLKTHAFWPQLILGQPPLDAAQQAQVLADAVDMFLGFYARG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23066; Mature: 22934

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAADALPRLTDRKREAIVQAAIAEFRESGFSGTSMDRVAAAAGVSKRTVYNHFPSKDEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHH
FSAILDQLWNRSHALPDLRHDADRPLRQQLLELIGGKMQLFNDPSFMDLSRVVMAEMLHT
HHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCC
PERAKAMAERLSSREEGLPAWIRDAQEAGRLRADADPLYAAHLLMGQLKTHAFWPQLILG
CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
QPPLDAAQQAQVLADAVDMFLGFYARG
CCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAADALPRLTDRKREAIVQAAIAEFRESGFSGTSMDRVAAAAGVSKRTVYNHFPSKDEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHH
FSAILDQLWNRSHALPDLRHDADRPLRQQLLELIGGKMQLFNDPSFMDLSRVVMAEMLHT
HHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCC
PERAKAMAERLSSREEGLPAWIRDAQEAGRLRADADPLYAAHLLMGQLKTHAFWPQLILG
CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
QPPLDAAQQAQVLADAVDMFLGFYARG
CCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA