Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120599177

Identifier: 120599177

GI number: 120599177

Start: 2733968

End: 2735746

Strand: Direct

Name: 120599177

Synonym: Sputw3181_2373

Alternate gene names: NA

Gene position: 2733968-2735746 (Clockwise)

Preceding gene: 120599173

Following gene: 120599184

Centisome position: 58.07

GC content: 45.47

Gene sequence:

>1779_bases
ATGATCCATTACCAAATAATCCCCGTTGATCCGAAAGCCCATTTATTTGCGGTCACTATGACGGTATCTAAGCCCAACGC
AGTGCAAATATTCAGCCTACCCGCTTGGCTGCCCGGCAGTTATATGGTGCGAGACTTCGCCAAAAATATCATTGAACTCA
AGGCTCAGGATGCAAACGGCCAAGCACTTAAACTCACCCAATTAGATAAGCAAACCTGGTCGGTTGACCATAATAGCAAC
GAAATTATTCTGACTTATCAAGTGTATGCTTGGGATTTATCGGTGCGCACCGCACATTTGGACATGACCCACGGTTTCTT
TAATGGCAGTAGCGTTTTTTTATCGGCACACGGTTTTGAAGATCAAACTCACACTGTCGCTCTGTTGCCTCCCACAGAAT
TAGCGTTAGGTGACTGGCGCGTCGCGACCAGCATGAGCCGCACCAGTGGTGATGACTTTGATTTTGGTCAATTCAGTGCC
GAAAATTATGATGAACTGATCGATCATCCCGTAGAGATGGGATTATTTACCCTAGGGAGTTTCGATGCCTGTGGCGTGCG
GCACGATATCGTACTCAATGGCCGCCATCGCGCTTGTATGCCAAGACTTTGCCAAGACTTAAAGGCCATTTGTGAGTACC
AAATTAACCTCTTTGGCACACCCGCACCCTTCAAACGTTATTTGTTTATGACCACAGTATTAGACAATGGTTTTGGCGGT
TTAGAGCACAGAGCGTCTACTGCATTAATGTGTTCTCGCAAAGATTTACCCCTTTCAATCGATGCGCCCATCAATAATGA
CTATCGCACCTATTTATCTTTATGTAGCCACGAGTATTTTCACAGCTGGAATGTGAAACGTATTAAACCAGAGTGCTTCC
GCCCTTATCGACTCGAAACAGAAACCTACACATCGCAACTGTGGGCCTATGAAGGGATAACCTCTTATTACGATGATTTT
CTGACCTACAGAGCAGGACTTGTCGATAAACAAAGCTATTTAGATATGCTGAGTGAAACCTTCACCCGCGTTTACCGTAG
TCCAGGGCGTTTTAAGCAAAGTATTAAAGATTCAAGCTTTAATGCGTGGACTAAGTTTTATAAACAGGATGAAAATGCAC
AAAACGCCATCATCAGCTATTACACTAAAGGCGCACTGTTTGCTTTGTATCTCGATTTAACCTTAAGAAGCGAGACGCAA
GGCAAGCACACTCTCGATGATGTGATGACAATTCTATGGCAAGAATATGCGCTGCAAAACCGTGGTACCACAGATGATTG
CCATCAAAAGATTGTTGAGCGCTTACTCGGGCGTGATTGTCACGACCTGTTCGCCTATTTAGATAACACCGACGACATTC
CATTGGCTCCTTTACTTGCTAAATTTGGCGTCGAACTTACCCTTCGGGCCAGCCAAGGCGCGCAAGATGTAGGCGGGGTC
AAGGCCAAAGGTTATGAAATAGCCTTTGGTGCTAAAACCCAAGCCGCACCAATCGGTTTAAAAATAGTGACTGTTACCCA
AGGCAGCCCTGCCCATCTTGCAGGTTTAAGCGCAGGAGATGTATTAATTGCCGCGGACAATCTTCAAGTCACAGGGCAAT
TTGAGGCACAGTTGCAACAGTATCCACTTGGACAAACCTTACCGTTACATTGGTTTAGACGGGATGAATTAATGATGGGG
GAGTTGACCATCACACCAGCACCAAAGGATACCGTCGCACTATCGATTATTGATGACACGAAATTAGCCGCTTGGCTTGG
CGTTGAAAATAAGCCATAA

Upstream 100 bases:

>100_bases
AACACTTTGTGTCTGCAGATATTTTGCTTTTCATTTGCCTGTTGCAGGCATTTTTGGCAGCATGACCACCATTAAAACAC
TCAGGTTTTGCAGGATAAAT

Downstream 100 bases:

>100_bases
ATTCATCGTTATAAAGCAGATAAATAAGGTCATTATTTATCTGCTTATGTTGATGTTCAGGTATTGTGCGTTGTTTTTAT
ACTTTTGCTATATCGCTTAG

Product: peptidase M61 domain-containing protein

Products: NA

Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Glycyl Aminopeptidase Protein; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 592; Mature: 592

Protein sequence:

>592_residues
MIHYQIIPVDPKAHLFAVTMTVSKPNAVQIFSLPAWLPGSYMVRDFAKNIIELKAQDANGQALKLTQLDKQTWSVDHNSN
EIILTYQVYAWDLSVRTAHLDMTHGFFNGSSVFLSAHGFEDQTHTVALLPPTELALGDWRVATSMSRTSGDDFDFGQFSA
ENYDELIDHPVEMGLFTLGSFDACGVRHDIVLNGRHRACMPRLCQDLKAICEYQINLFGTPAPFKRYLFMTTVLDNGFGG
LEHRASTALMCSRKDLPLSIDAPINNDYRTYLSLCSHEYFHSWNVKRIKPECFRPYRLETETYTSQLWAYEGITSYYDDF
LTYRAGLVDKQSYLDMLSETFTRVYRSPGRFKQSIKDSSFNAWTKFYKQDENAQNAIISYYTKGALFALYLDLTLRSETQ
GKHTLDDVMTILWQEYALQNRGTTDDCHQKIVERLLGRDCHDLFAYLDNTDDIPLAPLLAKFGVELTLRASQGAQDVGGV
KAKGYEIAFGAKTQAAPIGLKIVTVTQGSPAHLAGLSAGDVLIAADNLQVTGQFEAQLQQYPLGQTLPLHWFRRDELMMG
ELTITPAPKDTVALSIIDDTKLAAWLGVENKP

Sequences:

>Translated_592_residues
MIHYQIIPVDPKAHLFAVTMTVSKPNAVQIFSLPAWLPGSYMVRDFAKNIIELKAQDANGQALKLTQLDKQTWSVDHNSN
EIILTYQVYAWDLSVRTAHLDMTHGFFNGSSVFLSAHGFEDQTHTVALLPPTELALGDWRVATSMSRTSGDDFDFGQFSA
ENYDELIDHPVEMGLFTLGSFDACGVRHDIVLNGRHRACMPRLCQDLKAICEYQINLFGTPAPFKRYLFMTTVLDNGFGG
LEHRASTALMCSRKDLPLSIDAPINNDYRTYLSLCSHEYFHSWNVKRIKPECFRPYRLETETYTSQLWAYEGITSYYDDF
LTYRAGLVDKQSYLDMLSETFTRVYRSPGRFKQSIKDSSFNAWTKFYKQDENAQNAIISYYTKGALFALYLDLTLRSETQ
GKHTLDDVMTILWQEYALQNRGTTDDCHQKIVERLLGRDCHDLFAYLDNTDDIPLAPLLAKFGVELTLRASQGAQDVGGV
KAKGYEIAFGAKTQAAPIGLKIVTVTQGSPAHLAGLSAGDVLIAADNLQVTGQFEAQLQQYPLGQTLPLHWFRRDELMMG
ELTITPAPKDTVALSIIDDTKLAAWLGVENKP
>Mature_592_residues
MIHYQIIPVDPKAHLFAVTMTVSKPNAVQIFSLPAWLPGSYMVRDFAKNIIELKAQDANGQALKLTQLDKQTWSVDHNSN
EIILTYQVYAWDLSVRTAHLDMTHGFFNGSSVFLSAHGFEDQTHTVALLPPTELALGDWRVATSMSRTSGDDFDFGQFSA
ENYDELIDHPVEMGLFTLGSFDACGVRHDIVLNGRHRACMPRLCQDLKAICEYQINLFGTPAPFKRYLFMTTVLDNGFGG
LEHRASTALMCSRKDLPLSIDAPINNDYRTYLSLCSHEYFHSWNVKRIKPECFRPYRLETETYTSQLWAYEGITSYYDDF
LTYRAGLVDKQSYLDMLSETFTRVYRSPGRFKQSIKDSSFNAWTKFYKQDENAQNAIISYYTKGALFALYLDLTLRSETQ
GKHTLDDVMTILWQEYALQNRGTTDDCHQKIVERLLGRDCHDLFAYLDNTDDIPLAPLLAKFGVELTLRASQGAQDVGGV
KAKGYEIAFGAKTQAAPIGLKIVTVTQGSPAHLAGLSAGDVLIAADNLQVTGQFEAQLQQYPLGQTLPLHWFRRDELMMG
ELTITPAPKDTVALSIIDDTKLAAWLGVENKP

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66673; Mature: 66673

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHYQIIPVDPKAHLFAVTMTVSKPNAVQIFSLPAWLPGSYMVRDFAKNIIELKAQDANG
CEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCC
QALKLTQLDKQTWSVDHNSNEIILTYQVYAWDLSVRTAHLDMTHGFFNGSSVFLSAHGFE
CEEEEEECCCHHEEECCCCCEEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEECCCC
DQTHTVALLPPTELALGDWRVATSMSRTSGDDFDFGQFSAENYDELIDHPVEMGLFTLGS
CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCHHHCEEECCC
FDACGVRHDIVLNGRHRACMPRLCQDLKAICEYQINLFGTPAPFKRYLFMTTVLDNGFGG
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHEEEEHHHCCCCCC
LEHRASTALMCSRKDLPLSIDAPINNDYRTYLSLCSHEYFHSWNVKRIKPECFRPYRLET
CHHHCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECHHHCCCEEECC
ETYTSQLWAYEGITSYYDDFLTYRAGLVDKQSYLDMLSETFTRVYRSPGRFKQSIKDSSF
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
NAWTKFYKQDENAQNAIISYYTKGALFALYLDLTLRSETQGKHTLDDVMTILWQEYALQN
HHHHHHHHCCCCCCHHHEEEHHCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
RGTTDDCHQKIVERLLGRDCHDLFAYLDNTDDIPLAPLLAKFGVELTLRASQGAQDVGGV
CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCC
KAKGYEIAFGAKTQAAPIGLKIVTVTQGSPAHLAGLSAGDVLIAADNLQVTGQFEAQLQQ
CCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCCEEEEECCEEEEEHHHHHHHH
YPLGQTLPLHWFRRDELMMGELTITPAPKDTVALSIIDDTKLAAWLGVENKP
CCCCCCCCCEEEECCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCC
>Mature Secondary Structure
MIHYQIIPVDPKAHLFAVTMTVSKPNAVQIFSLPAWLPGSYMVRDFAKNIIELKAQDANG
CEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCCC
QALKLTQLDKQTWSVDHNSNEIILTYQVYAWDLSVRTAHLDMTHGFFNGSSVFLSAHGFE
CEEEEEECCCHHEEECCCCCEEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEECCCC
DQTHTVALLPPTELALGDWRVATSMSRTSGDDFDFGQFSAENYDELIDHPVEMGLFTLGS
CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCHHHCEEECCC
FDACGVRHDIVLNGRHRACMPRLCQDLKAICEYQINLFGTPAPFKRYLFMTTVLDNGFGG
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHEEEEHHHCCCCCC
LEHRASTALMCSRKDLPLSIDAPINNDYRTYLSLCSHEYFHSWNVKRIKPECFRPYRLET
CHHHCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECHHHCCCEEECC
ETYTSQLWAYEGITSYYDDFLTYRAGLVDKQSYLDMLSETFTRVYRSPGRFKQSIKDSSF
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
NAWTKFYKQDENAQNAIISYYTKGALFALYLDLTLRSETQGKHTLDDVMTILWQEYALQN
HHHHHHHHCCCCCCHHHEEEHHCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
RGTTDDCHQKIVERLLGRDCHDLFAYLDNTDDIPLAPLLAKFGVELTLRASQGAQDVGGV
CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCC
KAKGYEIAFGAKTQAAPIGLKIVTVTQGSPAHLAGLSAGDVLIAADNLQVTGQFEAQLQQ
CCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCCEEEEECCEEEEEHHHHHHHH
YPLGQTLPLHWFRRDELMMGELTITPAPKDTVALSIIDDTKLAAWLGVENKP
CCCCCCCCCEEEECCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA