Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120599119

Identifier: 120599119

GI number: 120599119

Start: 2668916

End: 2669518

Strand: Direct

Name: 120599119

Synonym: Sputw3181_2315

Alternate gene names: NA

Gene position: 2668916-2669518 (Clockwise)

Preceding gene: 120599118

Following gene: 120599120

Centisome position: 56.68

GC content: 48.59

Gene sequence:

>603_bases
ATGTACCAGATTGCGATTGTGATATTTGATGAATTTACCGATATCGATTTCTTCTTAATGCGCGATATTCTCGGCCGTAC
AAAAACCGATTGGACAGTAAAAGTACTCGGGACAAAGCCTAGCCACATATCAAGTTTGGGGATGCCGGTTGCAACCGATG
GTCATGTCGCTGAAGTCGCTGATGCCGACGTGGTATTATTCAGCAGTGGTTACAAAGGCGTACCTGCGGCACTTGCTGAT
ACTGAGTTTATGTCCGCCCTTAAATTAGATCCCACACGACAATTGCTTGGGAGTATCTGCGCGGGGTCATTCTTCTTTGC
CAAATTAGGGCTACTCGACAATCTCTCGGCAACGACTCACCCCGATGCAAAACCTGCCCTAGTTGCCATGGGCGTCGATG
TAGAAGACTGCGCCCTCGTGATTAATGGCAATATTGCCACTGCGGGCGGCTGCCTTTCCTCACTCTATTTAACGGGTTGG
GTTGCGGAGCGTTTATTCGACAGTGCGAAACGCCGCGAAATTCACAGGCAGCTTATTCCTGCTGGGCAAACAGATATTTT
TGAAACATTAATCCAATCCTCCATCTCCGCGGCCATTCGTTAA

Upstream 100 bases:

>100_bases
ACCAATAAAATCATGATTCTATTAATATTGAGGACCCAAGGCTTAAGGTTGAGCGTATTCAAGCCTTAAGTCATCCACAA
TACAAGCCAGAGGAAAGCTT

Downstream 100 bases:

>100_bases
AAGTGATGTAGATACTCTCGATGAATGAAAAGGATCCCATGATAAAACTTAAAAATCTTCTCGAAGCTATAAAAGCCGAG
CATCAAATCACCACCCAGAA

Product: ThiJ/PfpI domain-containing protein

Products: NA

Alternate protein names: ThiJ/PfpI Family Protein; DJ-1/PfpI Family Protein; ThiJ/PfpI Domain Protein; Transcriptional Regulator; Intracellular Protease/Amidase; AraC Family Transcription Regulator; Transcriptional Regulator AraC Family; DJ-1/PfpI Family; AraC-Family Transcriptional Regulator; AraC Family Transcriptional Regulator

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD
TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW
VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR

Sequences:

>Translated_200_residues
MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD
TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW
VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR
>Mature_200_residues
MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD
TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW
VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR

Specific function: Unknown

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21483; Mature: 21483

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVA
CEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEECC
DADVVLFSSGYKGVPAALADTEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTH
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGWVAERLFDSAKRREIHRQLIP
CCCCCEEEEECCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AGQTDIFETLIQSSISAAIR
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVA
CEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEECC
DADVVLFSSGYKGVPAALADTEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTH
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGWVAERLFDSAKRREIHRQLIP
CCCCCEEEEECCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AGQTDIFETLIQSSISAAIR
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA