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The map label for this gene is rnfE [H]

Identifier: 120598972

GI number: 120598972

Start: 2494679

End: 2495377

Strand: Direct

Name: rnfE [H]

Synonym: Sputw3181_2164

Alternate gene names: 120598972

Gene position: 2494679-2495377 (Clockwise)

Preceding gene: 120598971

Following gene: 120598973

Centisome position: 52.98

GC content: 47.07

Gene sequence:

>699_bases
ATGACTAATTATCGCGAAATTGCTTGGCAAGGTCTGTGGAAAAATAACCCCGGCTTAGTACAACTATTAGGCCTATGCCC
GCTCCTTGCTGTCACAGCAACCATAACCAATGCCCTAGGGCTAGGTGTAGCCACTATGTTAGTGCTAATAGGCTCTAATA
TTCTTGTGTCACTTGTACGCGACTATGTGCCTAAAGAAATCCGTATTCCCGTATTTGTGATGATCATCGCCGCGCTAGTC
ACCACAGTTCAGTTGCTCATCAATGCCTATGCCTATGGTCTGTATTTATCCCTTGGGATCTTCCTGCCGCTAATTGTAAC
GAACTGCATCATCATTGGCCGCGCCGAGGCATTTGCCTCACGTAACAATGCCTTTAGCGCCGCCTTCGATGGTTTAATGA
TGGGGCTAGGGTTTACCTTAGTGCTCGCCGTTCTTGGGGCAACACGGGAATTATTAGGTCAAGGCACACTATTTGATGGC
GCCGATCAATTGCTAGGCCCTTGGGCTAAATCCTTAACTATTCATGTATGGCAAGTGGATACCCCCTTTTTACTCGCTAT
GCTGCCACCCGGCGCTTTTATTGTGATGGGCTTATTGATTGCATTGAAGAATGTAATTGATAAAAAACTCAAAGAACACC
AACCACAAGTCGCCACCGAGCCAAGTGTGACACGCGCACGGATCACTAAGGTCAGTTAA

Upstream 100 bases:

>100_bases
ACACCACGCGCCTATGTTAACGCGGTTAAGCGTGCAGTATGGTACTTTAACAATAACCAAGCACAAATTTTCAGTCAGCC
ACTGAATTGTGAGATAAAAC

Downstream 100 bases:

>100_bases
CGAAGAATAGTGAATATGAATCAAGCAAAACGTATCCAGATCCTCACTCGTCTTCGTGATAACAATCCGAAACCCGAAAC
TGAGCTCAACTTTACTAGTC

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATRELLGQGTLFDG
ADQLLGPWAKSLTIHVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKEHQPQVATEPSVTRARITKVS

Sequences:

>Translated_232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATRELLGQGTLFDG
ADQLLGPWAKSLTIHVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKEHQPQVATEPSVTRARITKVS
>Mature_231_residues
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALVT
TVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATRELLGQGTLFDGA
DQLLGPWAKSLTIHVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKEHQPQVATEPSVTRARITKVS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=212, Percent_Identity=60.8490566037736, Blast_Score=253, Evalue=8e-69,
Organism=Escherichia coli, GI1787914, Length=159, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 25026; Mature: 24895

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGVATMLVLIGSNILVSLVR
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLAVLGATRELLGQGTLFDGADQLLGPWAKSLTIHVWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKLKEHQPQVATEPSVTRARITKVS
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGVATMLVLIGSNILVSLVR
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLAVLGATRELLGQGTLFDGADQLLGPWAKSLTIHVWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKLKEHQPQVATEPSVTRARITKVS
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA