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The map label for this gene is rnfD

Identifier: 120598970

GI number: 120598970

Start: 2492944

End: 2493993

Strand: Direct

Name: rnfD

Synonym: Sputw3181_2162

Alternate gene names: 120598970

Gene position: 2492944-2493993 (Clockwise)

Preceding gene: 120598969

Following gene: 120598971

Centisome position: 52.95

GC content: 47.43

Gene sequence:

>1050_bases
ATGGCGTTTAAAATAGCCTCATCACCCCATGTAACACGAAATCTGCATACTTCAACTGTGATGCAGCGGGTGATTTTATG
TTTACTGCCAGGCCTTGTGGTGCAGTGCGCCTTTTTTGGTTGGGGCACGCTCGTTCAAGTGCTACTAGCAATTATCGTCG
CATTAAGTGCTGAAGCTGTGGTAATGAAACTGCGTCAGCGCAGTATCAAAGCCAGCTTAAGTGATAACAGTGCCATGCTG
ACCGCGATCTTGATTGGTGTTGCGATTCCCCCACTCGCCCCTTGGTGGATGATCGTTATTGGGACAGCTTTTGCTATCAT
CATCGTCAAACACCTTTACGGCGGTTTAGGCCATAACTTGTTTAATCCAGCCATGGCCGCTTATGTACTACTGCTAATTT
CCTTTCCAGTGCAAATGACCACTTGGATTGCTCCAAGCACAGTTGCCATGCACTCGCCGAGTGTGCTTGATAGCTTGCAG
CTTATTTTCAATATCGGTGCCAATGTGAATATGGACCAATTTCGCCTAGGCATTGACGGTGTAGCCATGGCAACACCGCT
TGATACCCTAAAAACCGATTTATCCATGGGATTAACCCGCACAGAAAGTATGACAAAAGCCATTTTTGATGGCGCTACGG
GTGTAGGTTGGTTTTGGGTCAATTTAGCTTATCTTGCTGGCGGTTTAGTGCTGCTCAAACTTAAGGCGATTCGCTGGCAT
ATTAGCACTGGCGTATTAGCAGGGCTCTTTATCGCTTCGAGTGTCGGTTTTTTACTGTCACCCGATACTCAAGGCAGCCC
ATTATTCCATCTATTTTCTGGCGCAACCATGTTAGCGGCATTTTTTATTGCGACGGATCCTGTCACCGCCGCAACGAGTC
CCCGTGGTCGAATTATCTTCGGGACGTTAATAGGTATATTGGTCTATATCATTCGCACTCAAGGTGGCTACCCTGATGCT
TTCGCCTTTGCCGTATTACTGGCAAACCTTTGTGCTCCCTTTATTGACTATTACGTTCGTCCACGTAGCTACGGTCATTC
AGCGGGCTAG

Upstream 100 bases:

>100_bases
GGGCCGTGGATGCGACAAGTGATTCAAATGAATAACATAATTAACATAAGAATCAGCAACTTAACGGTTAACGACTCAAG
ATTAGATAAAAGGGAACAGA

Downstream 100 bases:

>100_bases
GCCTTTGTGTTAAGCATCAAGTGATGCTTGAAGAAAGACTCTTGAGGAAAGAAATTGAATAATCCAATGATTAAAAATGG
ACTGTTACTCGCTCTGTTTG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAIIVALSAEAVVMKLRQRSIKASLSDNSAML
TAILIGVAIPPLAPWWMIVIGTAFAIIIVKHLYGGLGHNLFNPAMAAYVLLLISFPVQMTTWIAPSTVAMHSPSVLDSLQ
LIFNIGANVNMDQFRLGIDGVAMATPLDTLKTDLSMGLTRTESMTKAIFDGATGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLAGLFIASSVGFLLSPDTQGSPLFHLFSGATMLAAFFIATDPVTAATSPRGRIIFGTLIGILVYIIRTQGGYPDA
FAFAVLLANLCAPFIDYYVRPRSYGHSAG

Sequences:

>Translated_349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAIIVALSAEAVVMKLRQRSIKASLSDNSAML
TAILIGVAIPPLAPWWMIVIGTAFAIIIVKHLYGGLGHNLFNPAMAAYVLLLISFPVQMTTWIAPSTVAMHSPSVLDSLQ
LIFNIGANVNMDQFRLGIDGVAMATPLDTLKTDLSMGLTRTESMTKAIFDGATGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLAGLFIASSVGFLLSPDTQGSPLFHLFSGATMLAAFFIATDPVTAATSPRGRIIFGTLIGILVYIIRTQGGYPDA
FAFAVLLANLCAPFIDYYVRPRSYGHSAG
>Mature_348_residues
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAIIVALSAEAVVMKLRQRSIKASLSDNSAMLT
AILIGVAIPPLAPWWMIVIGTAFAIIIVKHLYGGLGHNLFNPAMAAYVLLLISFPVQMTTWIAPSTVAMHSPSVLDSLQL
IFNIGANVNMDQFRLGIDGVAMATPLDTLKTDLSMGLTRTESMTKAIFDGATGVGWFWVNLAYLAGGLVLLKLKAIRWHI
STGVLAGLFIASSVGFLLSPDTQGSPLFHLFSGATMLAAFFIATDPVTAATSPRGRIIFGTLIGILVYIIRTQGGYPDAF
AFAVLLANLCAPFIDYYVRPRSYGHSAG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=56.8181818181818, Blast_Score=403, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37399; Mature: 37268

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAIIVALSAEAV
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
VMKLRQRSIKASLSDNSAMLTAILIGVAIPPLAPWWMIVIGTAFAIIIVKHLYGGLGHNL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLISFPVQMTTWIAPSTVAMHSPSVLDSLQLIFNIGANVNMDQFRLGIDG
HHHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHEECCCC
VAMATPLDTLKTDLSMGLTRTESMTKAIFDGATGVGWFWVNLAYLAGGLVLLKLKAIRWH
HHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISTGVLAGLFIASSVGFLLSPDTQGSPLFHLFSGATMLAAFFIATDPVTAATSPRGRIIF
HHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
GTLIGILVYIIRTQGGYPDAFAFAVLLANLCAPFIDYYVRPRSYGHSAG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAIIVALSAEAV
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA