Click here to switch to the map view.

The map label for this gene is rnfC [H]

Identifier: 120598969

GI number: 120598969

Start: 2490497

End: 2492878

Strand: Direct

Name: rnfC [H]

Synonym: Sputw3181_2161

Alternate gene names: 120598969

Gene position: 2490497-2492878 (Clockwise)

Preceding gene: 120598968

Following gene: 120598970

Centisome position: 52.89

GC content: 48.87

Gene sequence:

>2382_bases
GTGCTAACTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCGCATGGTGGTATACACCCTCCAGAAGTCAAATT
TCTCTCAAATGGCACTCCTATAGCAACACTGCCATTAGCAAAAACCTATTTAGTCCCTATACCTCAGGTGGGGGAAAATT
GCACACTTGCGGTAAAGCTCGGCGATAAAGTGTTAAAAGGCACGCCATTAACTCAAGGCCCCTCTATTTGGCATTTACCT
GTACATGCGCCGACATCAGGTACTATCGTTGCTATTGAGCCAAGAGCCAGCAACCATGCCTCAGCCCTCCCCGTTAATAC
GTGCGTTATCGAAGCCGATGGGAAAGATACTTGGTGCGAATTAGCCTCCAACGATCTCGATAGCCTAAGCCATCAGCAAA
TTATCGATAAAATACATCAAGCGGGTGTTGCGGGTATGGGCGGCGCGGCTTTTCCGAGTCATATCAAACTCAATCCCGCG
AGCGAAATTGATTTAGTCATTATCAATGGTGTTGAGTGTGAGCCTTATATCAGCTCAGATGACAGATTAATGCGCGAATA
CAGCCAAGATATTCTGGCAGGTATTGGGATTATTTATCGGTTATTAACACCCAAACGTATCGTTATCGCCATTGAAGATA
ATAAGCCTGAAGCGATCAAGGCCATGCAAATGGCTGTAGCGCAAAGTGCGCTACCGACAGGCAGTACTCGAGTTACCGTT
ATCCCCACCAAATATCCTTCAGGCGGTGAAAAACAGCTTATTCAGATTATTACTGGCCGTGAAGTACCCTCAGGAGCTAT
ACCCGCCAAACTCGGTATCGTTGTTCATAACGTCGGCACAGCCTTTGCCATACATCAAGCCGTTGTCCAAAATAAACCGC
TGGTTGAGCGCGTTGTCACAGTGACAGGTAAAAATGTGGGTAAACCTGGTAACTATTGGTTGCCAATTGGAACCCCCGTT
GAGCATGTGCTCATGCAAACCGAGTTTAAACCTGAAGCAGAGCAAAAGATCATCGTTGGTGGGCCTATGATGGGCCATGC
ACTACCGACCATTAATGTACCTATTTTAAAAGGTACTAACTGTATTTTGGTGCCGAGTAATCAAGAGATTGGGGTGACAC
CAGAGGAAAAAGCGTGTATTCGCTGCGGCGAGTGCGCCAATGTCTGCCCTGCACTGCTATTACCACAACAACTCTTTTGG
CACGCAAAAGCCGAAGAATATGATAAGGCTGCCAGTTTTAACCTAAAAGATTGTATTGAATGTGGTTGCTGTAGTTATGT
CTGCCCGAGTGATATTCCTTTAGTCGAATATTACCGTATTGCCAAATCAGCCTTAAAACAAACTGCCGATGAAAAGCAAC
AGGCAGAACGTGCCAAACACCGTTTTGAAGCACGTTTGGCTCGTCTAGAAGAAGAAAAGCTCGCCCGCGAAGCCAAAGCA
AAAGAAGCCGCAGAGCGTCGTCAGGCAACGATGACGGGCACAGATAAAAATGCCGTTGCTGAAGCGATCGCACGTATTGC
AGCCAAAAAAGCCGCTGCGACGCAGGCACCCAGTGAGACTGCAATAGCCCCCACTGCCGTGGTCGAAGTACCAAGGGAAA
AGGCAGCCGTTGCCGCAGCAATTGCCCGTGCCAAAGCCAAGAAAGCCGCCGCGGCCACAGCTTCTCAAGTTATTGATGAT
GAACCGGATTCATCTATGGAAACCGAGCAAGCCGAGCCTTTATCGCAAAAAGATAAAGTTGCGGCCGCCATTGCTCGGGC
CAAAGCGAAAAAGGCGACGATGAAAGCCGACTCGGATGTTAACGAGGATATTGATGCCGCTGAAGTCGACGCCGAAAAGC
GGGTTACTGGATCCGCAGCTAGTACTGAGGTGGATGATAAAAAGGCCAAAATCGCCGCGGCCGTCGCCCGTGCTAAAGCC
AAGAAAGCGAACCAGCAAAGTGGCATCGTAAGCGAAGATCAAACGCCAGCAGTTCAAGCACCTGAGGATCAAGCGACAAA
AACTCCAGTAGTGAATACGCCTGTCGCCGAGCCAGAGTCAAGCACTGTTACACCGAGTCCTGAGGATGATAAAAAAGCCA
GAGTTGCGGCAGCCGTTGCCCGGGCTAAAGCCAAAAAAGCGGCCGCCCAAGCCGATTCGAGTGAGGTTGCTGAAGTTCAG
CCAAAGCTAGAGGCAGAATCAGCTCAGCCAAGTGATACGCCGCTTAAGCCTGAACCCATTACTGAGCTTAGATCAGAACT
TAGCTCAGAACTCAGCTCAGAGCCGAGTCATCAACTCAGTCCCGAAGATGAGAAAAAGGCTAAAATCGCTGCAGCCGTTG
CCCGTGCAAAAGCGAAAAAAGCGGCAAGGGCCGTGGATGCGACAAGTGATTCAAATGAATAA

Upstream 100 bases:

>100_bases
CCCAAAATCTTAAAAATTGGAATTGGCGTTTAAATGCCATTCCAGTGACGCTGCTCCAAGAGACTGGGGATAACGAGACA
ATGTTAGAAGAGGAAAAGCG

Downstream 100 bases:

>100_bases
CATAATTAACATAAGAATCAGCAACTTAACGGTTAACGACTCAAGATTAGATAAAAGGGAACAGAATGGCGTTTAAAATA
GCCTCATCACCCCATGTAAC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 793; Mature: 793

Protein sequence:

>793_residues
MLTLLDQLDKGTLWRSHGGIHPPEVKFLSNGTPIATLPLAKTYLVPIPQVGENCTLAVKLGDKVLKGTPLTQGPSIWHLP
VHAPTSGTIVAIEPRASNHASALPVNTCVIEADGKDTWCELASNDLDSLSHQQIIDKIHQAGVAGMGGAAFPSHIKLNPA
SEIDLVIINGVECEPYISSDDRLMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQSALPTGSTRVTV
IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVVQNKPLVERVVTVTGKNVGKPGNYWLPIGTPV
EHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPILKGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFW
HAKAEEYDKAASFNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQTADEKQQAERAKHRFEARLARLEEEKLAREAKA
KEAAERRQATMTGTDKNAVAEAIARIAAKKAAATQAPSETAIAPTAVVEVPREKAAVAAAIARAKAKKAAAATASQVIDD
EPDSSMETEQAEPLSQKDKVAAAIARAKAKKATMKADSDVNEDIDAAEVDAEKRVTGSAASTEVDDKKAKIAAAVARAKA
KKANQQSGIVSEDQTPAVQAPEDQATKTPVVNTPVAEPESSTVTPSPEDDKKARVAAAVARAKAKKAAAQADSSEVAEVQ
PKLEAESAQPSDTPLKPEPITELRSELSSELSSEPSHQLSPEDEKKAKIAAAVARAKAKKAARAVDATSDSNE

Sequences:

>Translated_793_residues
MLTLLDQLDKGTLWRSHGGIHPPEVKFLSNGTPIATLPLAKTYLVPIPQVGENCTLAVKLGDKVLKGTPLTQGPSIWHLP
VHAPTSGTIVAIEPRASNHASALPVNTCVIEADGKDTWCELASNDLDSLSHQQIIDKIHQAGVAGMGGAAFPSHIKLNPA
SEIDLVIINGVECEPYISSDDRLMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQSALPTGSTRVTV
IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVVQNKPLVERVVTVTGKNVGKPGNYWLPIGTPV
EHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPILKGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFW
HAKAEEYDKAASFNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQTADEKQQAERAKHRFEARLARLEEEKLAREAKA
KEAAERRQATMTGTDKNAVAEAIARIAAKKAAATQAPSETAIAPTAVVEVPREKAAVAAAIARAKAKKAAAATASQVIDD
EPDSSMETEQAEPLSQKDKVAAAIARAKAKKATMKADSDVNEDIDAAEVDAEKRVTGSAASTEVDDKKAKIAAAVARAKA
KKANQQSGIVSEDQTPAVQAPEDQATKTPVVNTPVAEPESSTVTPSPEDDKKARVAAAVARAKAKKAAAQADSSEVAEVQ
PKLEAESAQPSDTPLKPEPITELRSELSSELSSEPSHQLSPEDEKKAKIAAAVARAKAKKAARAVDATSDSNE
>Mature_793_residues
MLTLLDQLDKGTLWRSHGGIHPPEVKFLSNGTPIATLPLAKTYLVPIPQVGENCTLAVKLGDKVLKGTPLTQGPSIWHLP
VHAPTSGTIVAIEPRASNHASALPVNTCVIEADGKDTWCELASNDLDSLSHQQIIDKIHQAGVAGMGGAAFPSHIKLNPA
SEIDLVIINGVECEPYISSDDRLMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQSALPTGSTRVTV
IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVVQNKPLVERVVTVTGKNVGKPGNYWLPIGTPV
EHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPILKGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFW
HAKAEEYDKAASFNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQTADEKQQAERAKHRFEARLARLEEEKLAREAKA
KEAAERRQATMTGTDKNAVAEAIARIAAKKAAATQAPSETAIAPTAVVEVPREKAAVAAAIARAKAKKAAAATASQVIDD
EPDSSMETEQAEPLSQKDKVAAAIARAKAKKATMKADSDVNEDIDAAEVDAEKRVTGSAASTEVDDKKAKIAAAVARAKA
KKANQQSGIVSEDQTPAVQAPEDQATKTPVVNTPVAEPESSTVTPSPEDDKKARVAAAVARAKAKKAAAQADSSEVAEVQ
PKLEAESAQPSDTPLKPEPITELRSELSSELSSEPSHQLSPEDEKKAKIAAAVARAKAKKAARAVDATSDSNE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=564, Percent_Identity=46.4539007092199, Blast_Score=512, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 84151; Mature: 84151

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLLDQLDKGTLWRSHGGIHPPEVKFLSNGTPIATLPLAKTYLVPIPQVGENCTLAVKL
CCCHHHHCCCCCEECCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCCEEEEEE
GDKVLKGTPLTQGPSIWHLPVHAPTSGTIVAIEPRASNHASALPVNTCVIEADGKDTWCE
CCHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCHHHH
LASNDLDSLSHQQIIDKIHQAGVAGMGGAAFPSHIKLNPASEIDLVIINGVECEPYISSD
HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC
DRLMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQSALPTGSTRVTV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEE
IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVVQNKPLVERVVT
EECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCEEEECCCHHHHHHHHHHCCCCHHHHHHH
VTGKNVGKPGNYWLPIGTPVEHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPILKGTN
HCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCCCEEEEECCC
CILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFWHAKAEEYDKAASFNLKDCIE
EEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
CGCCSYVCPSDIPLVEYYRIAKSALKQTADEKQQAERAKHRFEARLARLEEEKLAREAKA
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAAERRQATMTGTDKNAVAEAIARIAAKKAAATQAPSETAIAPTAVVEVPREKAAVAAA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHH
IARAKAKKAAAATASQVIDDEPDSSMETEQAEPLSQKDKVAAAIARAKAKKATMKADSDV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NEDIDAAEVDAEKRVTGSAASTEVDDKKAKIAAAVARAKAKKANQQSGIVSEDQTPAVQA
CCCCCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCC
PEDQATKTPVVNTPVAEPESSTVTPSPEDDKKARVAAAVARAKAKKAAAQADSSEVAEVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
PKLEAESAQPSDTPLKPEPITELRSELSSELSSEPSHQLSPEDEKKAKIAAAVARAKAKK
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AARAVDATSDSNE
HHHHHCCCCCCCC
>Mature Secondary Structure
MLTLLDQLDKGTLWRSHGGIHPPEVKFLSNGTPIATLPLAKTYLVPIPQVGENCTLAVKL
CCCHHHHCCCCCEECCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCCEEEEEE
GDKVLKGTPLTQGPSIWHLPVHAPTSGTIVAIEPRASNHASALPVNTCVIEADGKDTWCE
CCHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCHHHH
LASNDLDSLSHQQIIDKIHQAGVAGMGGAAFPSHIKLNPASEIDLVIINGVECEPYISSD
HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC
DRLMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQSALPTGSTRVTV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEE
IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVVQNKPLVERVVT
EECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCEEEECCCHHHHHHHHHHCCCCHHHHHHH
VTGKNVGKPGNYWLPIGTPVEHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPILKGTN
HCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCCCEEEEECCC
CILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFWHAKAEEYDKAASFNLKDCIE
EEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
CGCCSYVCPSDIPLVEYYRIAKSALKQTADEKQQAERAKHRFEARLARLEEEKLAREAKA
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAAERRQATMTGTDKNAVAEAIARIAAKKAAATQAPSETAIAPTAVVEVPREKAAVAAA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHH
IARAKAKKAAAATASQVIDDEPDSSMETEQAEPLSQKDKVAAAIARAKAKKATMKADSDV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NEDIDAAEVDAEKRVTGSAASTEVDDKKAKIAAAVARAKAKKANQQSGIVSEDQTPAVQA
CCCCCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCC
PEDQATKTPVVNTPVAEPESSTVTPSPEDDKKARVAAAVARAKAKKAAAQADSSEVAEVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
PKLEAESAQPSDTPLKPEPITELRSELSSELSSEPSHQLSPEDEKKAKIAAAVARAKAKK
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AARAVDATSDSNE
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA