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The map label for this gene is rnfB [H]

Identifier: 120598968

GI number: 120598968

Start: 2489904

End: 2490503

Strand: Direct

Name: rnfB [H]

Synonym: Sputw3181_2160

Alternate gene names: 120598968

Gene position: 2489904-2490503 (Clockwise)

Preceding gene: 120598967

Following gene: 120598969

Centisome position: 52.88

GC content: 47.17

Gene sequence:

>600_bases
ATGTCCACCATTTTAATCGCTGTCATATTATTGACCCTGTTGGCATTGGTCTTTGGGGTATTACTCGGTTTTGCCGCCCT
TAAATTTAAGGTTGAAGGTAACCCGATTGTCGATGAACTCGAAGCCATTCTGCCACAAACCCAATGTGGTCAATGTGGTT
ACCCAGGTTGTCGTCCTTATGCCCAGGCCATCGCCAATGGCGACAAAGTCAACAAATGCCCTCCAGGCGGCACAGCCACA
ATGGAGAAACTAGCCAATTTGATGGGTGTTGAGCCTGAGCCTCTCAATGCCGAAGCACAATCGCAGGTCAAAAAAGTCGC
TTTTATTCGTGAGGATGAGTGTATTGGCTGCACTAAGTGTATTCAGGCCTGTCCCGTGGATGCCATTATCGGTGCAGGTA
AATTAATGCATACCGTGCTCACCACAGATTGCACAGGTTGTGACCTCTGTGTTGAACCCTGCCCTGTCGATTGTATTGAT
ATGATCCCCGTAACCCAAAATCTTAAAAATTGGAATTGGCGTTTAAATGCCATTCCAGTGACGCTGCTCCAAGAGACTGG
GGATAACGAGACAATGTTAGAAGAGGAAAAGCGGTGCTAA

Upstream 100 bases:

>100_bases
GCCGATGTACCCTTGCCATTTAAGGGCGGCGCAATTGCCATGATTACCGCAGGTTTAATGTCCCTTGCCTTTATGGGATT
CACAGGATTGGTTAAGTAGT

Downstream 100 bases:

>100_bases
CTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCGCATGGTGGTATACACCCTCCAGAAGTCAAATTTCTCTCA
AATGGCACTCCTATAGCAAC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSTILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAQAIANGDKVNKCPPGGTAT
MEKLANLMGVEPEPLNAEAQSQVKKVAFIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCID
MIPVTQNLKNWNWRLNAIPVTLLQETGDNETMLEEEKRC

Sequences:

>Translated_199_residues
MSTILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAQAIANGDKVNKCPPGGTAT
MEKLANLMGVEPEPLNAEAQSQVKKVAFIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCID
MIPVTQNLKNWNWRLNAIPVTLLQETGDNETMLEEEKRC
>Mature_198_residues
STILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAQAIANGDKVNKCPPGGTATM
EKLANLMGVEPEPLNAEAQSQVKKVAFIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM
IPVTQNLKNWNWRLNAIPVTLLQETGDNETMLEEEKRC

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=186, Percent_Identity=56.989247311828, Blast_Score=231, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 21452; Mature: 21321

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
7.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AQAIANGDKVNKCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAFIREDECIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIPVTQNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHCCCCCCCEEEEEEEE
TLLQETGDNETMLEEEKRC
EEEECCCCCHHHHHHHCCC
>Mature Secondary Structure 
STILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AQAIANGDKVNKCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAFIREDECIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIPVTQNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHCCCCCCCEEEEEEEE
TLLQETGDNETMLEEEKRC
EEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]