| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598940
Identifier: 120598940
GI number: 120598940
Start: 2454217
End: 2455395
Strand: Direct
Name: 120598940
Synonym: Sputw3181_2132
Alternate gene names: NA
Gene position: 2454217-2455395 (Clockwise)
Preceding gene: 120598939
Following gene: 120598941
Centisome position: 52.12
GC content: 42.83
Gene sequence:
>1179_bases ATGATCAAAACGCCCTGCTCCAATCATTGGGATATCTTTTGCACTGTTGTCGATAACTACGGTGATATCGGCGTCACTTG GCGTTTAGCCAAACAATTGGTGAATGAATATCAGCTCCCCGTCAATTTATGGGTTGACGATCTTGCAAGCTTCTCCCATA TCTTACCGACACTCGATCCACGAAAGGCGATTCAAACTTTCAATGACGTGAATATTATTCATTGGATAGAGCCTTTGCCT ATAGCGTTTGTCGCAGGAAGTGTGCTCATAGAAGCCTTTGCCTGTGAATTACCAGAACAGGTAAAAGAACAGTTGGTTTA TTTACATCAACATGCTCCCAAATCTGTACCTGTCTGGCTGAATTTAGAGTACCTAAGCGCTGAGGATTGGGTTGAAGGCT GCCATGGTTTGCCTTCATTACAAGCCAATGGTTTGAAGAAGTATTTCTACTTTCCTGGTTTTAGCGCCAAAACGGGTGGA CTTATCTGCGAACAAGATTTATTTGCAAAGCGTGATGTATGGCAAGCTAACACTGCCAATAAATTGCAGCTCTTTACTGA TTTAGGTCTTAAGGGCATTCAGGAACAAGACACAGTGATTAGCGTTTTTAGCTATGAGACCGAGGCGCTACCCGCATTAT GTGAGTTATGGCAGCAATCGACAGTAAAAATCCATGCACTGATCCCAAAGGGGCGTAGCTTAAACAGTCTGACTCATTTA CTGCCCTGTGAAATTGCCGCGCTAGTGCCGGGTCAACAGGTAAATCATGGCAATTTGACCCTGCATATTTTACCTATGAC AGATCAACATGGGTTTGATCGCCTGCTCTGGAGCTGTGATGTTAATATCGTACGCGGTGAAGATAGTTTTCTTCGGGCAC AATGGGCTGCTAAACCTTTTATTTGGCACATTTATCCACAAGAAGATGACTATCACCTCATAAAATTAGGAGCTTTTATC CAACTTTACTGCGATAATCTGCTCCCTGAAATTGCACAAACTTGGACTAACTTGAATTTAGCATTCAACCAAGGATTGCA ATCTGCCGTGGTAAATCATTGGCAAAACCTTAATCCAGTCAGTTTGCCCTTGTTGCAACATGCTAAACAATGGCCAATTG ACGCAATAAATGCTGCAGATCTCGCAACTCGGCTAGTCCAATTCGTTAAAAAAAGCTAA
Upstream 100 bases:
>100_bases TCATTTAAAGGAAGCGGCTTAAACGCCGCTTTTTTTATGCATCGATTTGCATGCATAAAAATTAGATTGTTTCATCGCGG GATAACGAAAAACCACACTC
Downstream 100 bases:
>100_bases GATGCTGCGCGAAAATAGAAAATCTACATATAGGAAATAGTGTAATGAAAACTGCTCATGAAATCCGTCCTGGTAACGTG ATCATGTTAGATGGCAGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDPRKAIQTFNDVNIIHWIEPLP IAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWLNLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGG LICEQDLFAKRDVWQANTANKLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHL LPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLGAFI QLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPVSLPLLQHAKQWPIDAINAADLATRLVQFVKKS
Sequences:
>Translated_392_residues MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDPRKAIQTFNDVNIIHWIEPLP IAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWLNLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGG LICEQDLFAKRDVWQANTANKLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHL LPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLGAFI QLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPVSLPLLQHAKQWPIDAINAADLATRLVQFVKKS >Mature_392_residues MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDPRKAIQTFNDVNIIHWIEPLP IAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWLNLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGG LICEQDLFAKRDVWQANTANKLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHL LPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLGAFI QLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPVSLPLLQHAKQWPIDAINAADLATRLVQFVKKS
Specific function: Unknown
COG id: COG4394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44430; Mature: 44430
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDP CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCH RKAIQTFNDVNIIHWIEPLPIAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWL HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE NLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGGLICEQDLFAKRDVWQANTAN EEEEECHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCC KLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHL CEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH LPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPF HHHHHHHCCCCCEECCCCEEEEEEECCCCCCHHHHHEECCCEEEECCCHHHHHHHCCCCE IWHIYPQEDDYHLIKLGAFIQLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPV EEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCC SLPLLQHAKQWPIDAINAADLATRLVQFVKKS CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MIKTPCSNHWDIFCTVVDNYGDIGVTWRLAKQLVNEYQLPVNLWVDDLASFSHILPTLDP CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCH RKAIQTFNDVNIIHWIEPLPIAFVAGSVLIEAFACELPEQVKEQLVYLHQHAPKSVPVWL HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE NLEYLSAEDWVEGCHGLPSLQANGLKKYFYFPGFSAKTGGLICEQDLFAKRDVWQANTAN EEEEECHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCC KLQLFTDLGLKGIQEQDTVISVFSYETEALPALCELWQQSTVKIHALIPKGRSLNSLTHL CEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH LPCEIAALVPGQQVNHGNLTLHILPMTDQHGFDRLLWSCDVNIVRGEDSFLRAQWAAKPF HHHHHHHCCCCCEECCCCEEEEEEECCCCCCHHHHHEECCCEEEECCCHHHHHHHCCCCE IWHIYPQEDDYHLIKLGAFIQLYCDNLLPEIAQTWTNLNLAFNQGLQSAVVNHWQNLNPV EEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCC SLPLLQHAKQWPIDAINAADLATRLVQFVKKS CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA