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The map label for this gene is rhaS [C]

Identifier: 120598902

GI number: 120598902

Start: 2410410

End: 2411306

Strand: Direct

Name: rhaS [C]

Synonym: Sputw3181_2094

Alternate gene names: 120598902

Gene position: 2410410-2411306 (Clockwise)

Preceding gene: 120598901

Following gene: 120598903

Centisome position: 51.19

GC content: 44.93

Gene sequence:

>897_bases
ATGGTGGTTGCCTTGCAGTACAGGACCGATTTATTAGAAATACATCGTTTTACGCGTTTCGAGAGCTCGCTAGCGCACTT
AGGTTTTAGGCATTTTCAGCCCTTAGCGTCACTTCGCCCATGGGTACACCGTTACTTTCATCTGCAGGTGGCAACAAATT
TACCGCAGAGTATCGAACAAACTTTCTATCCTGACGGCGGTACCAGCCTACAGTTCTATTTCCCAGCACCAAGCCTTAAT
ACAAACTCCGATGAACCTAAAGTAGTTTTTCACTGTGGTCAGAGTCTACATTCCCACGCATTTGTCCCCGGAATAGAACA
AATGATCGTCCGTTTTCATCCCGGCGGTGCTTTTCATTTACTCGGAATTGCAGTGCAAGAGATTCAGCAAACAAGTTCAC
ATACTGTAATCGAAGCCACTCAATTGCACCTACCAGGATTAAATCAGTTATTATCACAACTCGCAGACACCAATCAGCCA
ATGCAACGTATCGCCCAACTCGAACAGTGGTTATTACAGTTAATCAAGCCACAACTTGATAGGGGAACATGGTCTACCGC
AGGGATTGTGCAAATGAGTTTACCAAGGCTTATCCAACCTCAAACCCGTTTAGAGAATTTTTATGGACAACTTGCCCTAA
GCCGCCGCCAATTTGAACGCAGATTTAAACAAGAAACGGGACTCTCTCCGGCACAACTACAGCAGTTAAACAGAGTCAAA
ATCGCCCGCGATCTACTTAGTCAATCACCCGAACTTAATCTAGCGCAGGTGGCATTTGATTGTGGGTTTTACGATCAAGC
TCATCTACATCAACACTTTGTCAGGGTGACACAGCAAACACCAGGGCAATACAAAAAACGCAAAATGTCGCAAATCTCCA
ATCTAACGCAACGCTAA

Upstream 100 bases:

>100_bases
GGGGCTCTTAGCAAATTGTTCTTAACACCGATGATAAGCACTCCAGTCAACTGTTAGTGCAATCATCTATCGGTTAGATT
AATCTAAATAACCTTACCTA

Downstream 100 bases:

>100_bases
CTACTTATATTGAAGCCTCAGTTTATAGGAGGTTTTTATGTCAGAACGTATACCACACCAACAAATTTATCAGCTACAAC
CCGCACTATCCCAAGCACTA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Helix-TurN-Helix Arac Domain

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVVALQYRTDLLEIHRFTRFESSLAHLGFRHFQPLASLRPWVHRYFHLQVATNLPQSIEQTFYPDGGTSLQFYFPAPSLN
TNSDEPKVVFHCGQSLHSHAFVPGIEQMIVRFHPGGAFHLLGIAVQEIQQTSSHTVIEATQLHLPGLNQLLSQLADTNQP
MQRIAQLEQWLLQLIKPQLDRGTWSTAGIVQMSLPRLIQPQTRLENFYGQLALSRRQFERRFKQETGLSPAQLQQLNRVK
IARDLLSQSPELNLAQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNLTQR

Sequences:

>Translated_298_residues
MVVALQYRTDLLEIHRFTRFESSLAHLGFRHFQPLASLRPWVHRYFHLQVATNLPQSIEQTFYPDGGTSLQFYFPAPSLN
TNSDEPKVVFHCGQSLHSHAFVPGIEQMIVRFHPGGAFHLLGIAVQEIQQTSSHTVIEATQLHLPGLNQLLSQLADTNQP
MQRIAQLEQWLLQLIKPQLDRGTWSTAGIVQMSLPRLIQPQTRLENFYGQLALSRRQFERRFKQETGLSPAQLQQLNRVK
IARDLLSQSPELNLAQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNLTQR
>Mature_298_residues
MVVALQYRTDLLEIHRFTRFESSLAHLGFRHFQPLASLRPWVHRYFHLQVATNLPQSIEQTFYPDGGTSLQFYFPAPSLN
TNSDEPKVVFHCGQSLHSHAFVPGIEQMIVRFHPGGAFHLLGIAVQEIQQTSSHTVIEATQLHLPGLNQLLSQLADTNQP
MQRIAQLEQWLLQLIKPQLDRGTWSTAGIVQMSLPRLIQPQTRLENFYGQLALSRRQFERRFKQETGLSPAQLQQLNRVK
IARDLLSQSPELNLAQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNLTQR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34293; Mature: 34293

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVALQYRTDLLEIHRFTRFESSLAHLGFRHFQPLASLRPWVHRYFHLQVATNLPQSIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TFYPDGGTSLQFYFPAPSLNTNSDEPKVVFHCGQSLHSHAFVPGIEQMIVRFHPGGAFHL
HCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHCCCCCCCHHHHHHHCCCCCHHHH
LGIAVQEIQQTSSHTVIEATQLHLPGLNQLLSQLADTNQPMQRIAQLEQWLLQLIKPQLD
HHHHHHHHHHCCCCCEEEHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
RGTWSTAGIVQMSLPRLIQPQTRLENFYGQLALSRRQFERRFKQETGLSPAQLQQLNRVK
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IARDLLSQSPELNLAQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNLTQR
HHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVVALQYRTDLLEIHRFTRFESSLAHLGFRHFQPLASLRPWVHRYFHLQVATNLPQSIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TFYPDGGTSLQFYFPAPSLNTNSDEPKVVFHCGQSLHSHAFVPGIEQMIVRFHPGGAFHL
HCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHCCCCCCCHHHHHHHCCCCCHHHH
LGIAVQEIQQTSSHTVIEATQLHLPGLNQLLSQLADTNQPMQRIAQLEQWLLQLIKPQLD
HHHHHHHHHHCCCCCEEEHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
RGTWSTAGIVQMSLPRLIQPQTRLENFYGQLALSRRQFERRFKQETGLSPAQLQQLNRVK
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IARDLLSQSPELNLAQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNLTQR
HHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA