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The map label for this gene is infC

Identifier: 120598809

GI number: 120598809

Start: 2312417

End: 2312848

Strand: Direct

Name: infC

Synonym: Sputw3181_1995

Alternate gene names: 120598809

Gene position: 2312417-2312848 (Clockwise)

Preceding gene: 120598808

Following gene: 120598810

Centisome position: 49.11

GC content: 43.98

Gene sequence:

>432_bases
GTGGTAAGCATCAGAGATGCTCAGAATTTGGCAGATGAAGCAGGTGTAGACCTAGTAGAAATCAGCCCAAATGCTGAACC
TCCAGTATGTCGCATTATGGACTACGGTAAGTTCCTATTTGATAAAGCGAAAGCGCAAAAGGAACAAAAGAAGAAGCAAA
AGCAGGTTCAGGTTAAGGAAATTAAATTCCGTCCTGGAACTGACGAAAACGACTATCAGGTAAAACTACGCAACCTGATA
CGTTTTCTGGAAGACGGGGACAAAGCGAAGATTACGCTGCGTTTCCGAGGTCGCGAAATGGCCCACCAAAACCTAGGTAT
GGATCTTCTGAACCGTATCAAGGCTGATTTGGACGAGTATGCGGTTGTTGAATCTTTCCCTAAAATGGAAGGTCGACAAG
CAATTATGGTGCTAGCGCCTAAAAAGAAATAA

Upstream 100 bases:

>100_bases
AAAAACAGCAGGGCGTCAGCCGGCCCCTAATAGAATCAATGAAGAAATCACAGGCGTACCTGAAGTACGTTTAACAGGCA
TTGATGGTGAAGCTATTGGT

Downstream 100 bases:

>100_bases
GTAGGGCAACCCTAAAGTAGCAAAGGTCTATGACCTTTGCTCGCCTTGCTTTTTATATAACATCCCAATGCGGAGTTTTA
GTAATGCCTAAAATGAAAAC

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKADLDEYAVVESFPKMEGRQAIMVLAPKKK

Sequences:

>Translated_143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKADLDEYAVVESFPKMEGRQAIMVLAPKKK
>Mature_143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKADLDEYAVVESFPKMEGRQAIMVLAPKKK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=144, Percent_Identity=80.5555555555556, Blast_Score=216, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 16479; Mature: 16479

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKE
CCCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKADLDEY
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
AVVESFPKMEGRQAIMVLAPKKK
HHHHHCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKE
CCCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKADLDEY
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
AVVESFPKMEGRQAIMVLAPKKK
HHHHHCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA