| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yfiP [H]
Identifier: 120598799
GI number: 120598799
Start: 2300124
End: 2300894
Strand: Direct
Name: yfiP [H]
Synonym: Sputw3181_1985
Alternate gene names: 120598799
Gene position: 2300124-2300894 (Clockwise)
Preceding gene: 120598796
Following gene: 120598801
Centisome position: 48.85
GC content: 46.04
Gene sequence:
>771_bases ATGGCTCTAGCCCCCCATGCCGTCCACCGTCTATATGAGTACCGTAAGTCTATTTCGACTAAGCCTTTTGGTGCCCGTGG CAAAAAATTGATCCGCTGCCCATTATGCCTTTTAGGTGAGCAGTTTTGTACCTGTGCGCTGCGCCGTCAGTTACAGACTC AAGCCAGTTTTTTGCTGATCATGTATAACGATGAAGTGTTAAAACCGACGAATAGTGGCCGACTCATTGCGGATCTTATT CCTGATACTCATGCCTATATTTGGTCACGTACAGAACCTGAAGCTGAGTTGCTTGGCTTGCTTGAGTCGCCGCAATATCA ACCTTATTTAGTGTTTCCAGCCCAATATGCAGAGCAAGGGCAGATTGTACTAAATCAAGTACCTATGTCGACATTAGCTG AAGGTAAACGGCCGCTGCTGATCATGCTTGATGGCAGTTGGCGTGAAGCGATAAAAATGTTCCGTAAGAGTCCTTATTTG CACTCGTTGCCCTTATTATCATTCGATCCCGATACGCTTGCGACATATGCGCTACGAAAGGGGAGTCACGACTTTCAACT GGGTACCGCTGAGGTCGCTTCTTTAGCGTTAGCCGCGATAGGTGAGGAGGCAAATAGCAAAGCCCTTAGCACTTGGTTTG ATTTGTTTGTTGAATCATCATTACTTGGTCGTAATCGGCGTTGTAGAGAAGATCTTTTACCCATTTCATCCTTTACAGAT GCTGTTGAAGCGGCTTATGAAAAGGCAAATGCCATTTTGCCCAGCGTTTAA
Upstream 100 bases:
>100_bases TGCGCCATTGATGGTCAAGGGATAAACTGCGTCGCCGCAATAGGGAAGATTAAAAGCCCTCCATTGCAGCTTATCATAAG TTTGAAAGAGAATTGGTTTT
Downstream 100 bases:
>100_bases TTTATTTCAGTGGAAGAACGAAACTTCACAAATAAAACTCCCCTAACAAGTAGGGGAGTTTTGCTTTAATTGCGTTTATT TTTAACTGCTATGGTTAAAC
Product: DTW domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MALAPHAVHRLYEYRKSISTKPFGARGKKLIRCPLCLLGEQFCTCALRRQLQTQASFLLIMYNDEVLKPTNSGRLIADLI PDTHAYIWSRTEPEAELLGLLESPQYQPYLVFPAQYAEQGQIVLNQVPMSTLAEGKRPLLIMLDGSWREAIKMFRKSPYL HSLPLLSFDPDTLATYALRKGSHDFQLGTAEVASLALAAIGEEANSKALSTWFDLFVESSLLGRNRRCREDLLPISSFTD AVEAAYEKANAILPSV
Sequences:
>Translated_256_residues MALAPHAVHRLYEYRKSISTKPFGARGKKLIRCPLCLLGEQFCTCALRRQLQTQASFLLIMYNDEVLKPTNSGRLIADLI PDTHAYIWSRTEPEAELLGLLESPQYQPYLVFPAQYAEQGQIVLNQVPMSTLAEGKRPLLIMLDGSWREAIKMFRKSPYL HSLPLLSFDPDTLATYALRKGSHDFQLGTAEVASLALAAIGEEANSKALSTWFDLFVESSLLGRNRRCREDLLPISSFTD AVEAAYEKANAILPSV >Mature_255_residues ALAPHAVHRLYEYRKSISTKPFGARGKKLIRCPLCLLGEQFCTCALRRQLQTQASFLLIMYNDEVLKPTNSGRLIADLIP DTHAYIWSRTEPEAELLGLLESPQYQPYLVFPAQYAEQGQIVLNQVPMSTLAEGKRPLLIMLDGSWREAIKMFRKSPYLH SLPLLSFDPDTLATYALRKGSHDFQLGTAEVASLALAAIGEEANSKALSTWFDLFVESSLLGRNRRCREDLLPISSFTDA VEAAYEKANAILPSV
Specific function: Unknown
COG id: COG3148
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTW family [H]
Homologues:
Organism=Escherichia coli, GI87082133, Length=221, Percent_Identity=44.7963800904977, Blast_Score=190, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005636 [H]
Pfam domain/function: PF03942 DTW [H]
EC number: NA
Molecular weight: Translated: 28662; Mature: 28531
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALAPHAVHRLYEYRKSISTKPFGARGKKLIRCPLCLLGEQFCTCALRRQLQTQASFLLI CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEE MYNDEVLKPTNSGRLIADLIPDTHAYIWSRTEPEAELLGLLESPQYQPYLVFPAQYAEQG EECCCEECCCCCCCEEEECCCCCHHEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCC QIVLNQVPMSTLAEGKRPLLIMLDGSWREAIKMFRKSPYLHSLPLLSFDPDTLATYALRK CEEEECCCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHC GSHDFQLGTAEVASLALAAIGEEANSKALSTWFDLFVESSLLGRNRRCREDLLPISSFTD CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH AVEAAYEKANAILPSV HHHHHHHHHCCCCCCC >Mature Secondary Structure ALAPHAVHRLYEYRKSISTKPFGARGKKLIRCPLCLLGEQFCTCALRRQLQTQASFLLI CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEE MYNDEVLKPTNSGRLIADLIPDTHAYIWSRTEPEAELLGLLESPQYQPYLVFPAQYAEQG EECCCEECCCCCCCEEEECCCCCHHEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCC QIVLNQVPMSTLAEGKRPLLIMLDGSWREAIKMFRKSPYLHSLPLLSFDPDTLATYALRK CEEEECCCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHC GSHDFQLGTAEVASLALAAIGEEANSKALSTWFDLFVESSLLGRNRRCREDLLPISSFTD CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH AVEAAYEKANAILPSV HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]