Click here to switch to the map view.

The map label for this gene is yjfF [H]

Identifier: 120598771

GI number: 120598771

Start: 2263073

End: 2264035

Strand: Direct

Name: yjfF [H]

Synonym: Sputw3181_1956

Alternate gene names: 120598771

Gene position: 2263073-2264035 (Clockwise)

Preceding gene: 120598770

Following gene: 120598772

Centisome position: 48.06

GC content: 44.76

Gene sequence:

>963_bases
ATGATGTCTAAGCGTTTTATTCCATTGTGGATCACGGCCTCCTTGTTGTTGGTCATGTTTCTGATAGGGGCGTTACAATT
TGAGGGGTTTGCAAGCGTTCGAGTGGTGACTAACCTATTCCGTGATAATGCTTTTCTATTGATCACTGCACTTGGGATGA
CCCTAGTGATTATCTCGGGGGGTATTGATCTCTCCGTCGGCGCTGTGATTGCTTTAAGTGGTGTACTCAGTAGTGTATTA
ATTACGCAATATCAGTGGCATCCTTTGCTCGCTTTTGCACTTATCTTACCCTTAGGCACGCTCTTTGGCGCACTGATGGG
CACGATCATTCATGTCTATAAGTTGCAGCCTTTTATTGTGACCCTTGCGGGGATGTTTCTTGCCCGTGGTATTGCGACAA
CGGTAAGTGAAGAGTCGATAGCGATTGATCATCCATTTTATGATGTGATTGCCGACCTGAGCATCGCTTTACCAGGTAAT
GGTTCACTCGATATCAGTTCGCTGATTTTTATTGTTTTTTTTGCCATTATCGCCACCATGATGCACTACAGTCGTTTTGG
TACAAATGTGTATGCCCTCGGTGGTAATGCGCAGTCTGCCGAGTTAATGGGGGTTTCGATTGCAAAAACCACCATTAGCA
TTTACGCCCTTAGCAGTTTTCTCGCCACTTTGGCGGGGATTATTTTCACCTTCTATACCTTTTCTGGTTATTCCCTTGGG
GCGGTTGGCGTAGAACTTGACGCTATTGCTGCCGTGGTGATTGGGGGGACATTACTTACTGGCGGGAGTGGTTTTATATT
AGGTACTGTACTTGGGGTATTTTTGATGGGAGTTATCCAAACCTACATCACCTTTGACGGTACACTCAGTAGTTGGTGGA
CCAAGATAGTAATTGGCTTATTGCTATTTTTCTTCATCGTGTTACAGAAACTCTTGAATGGACGCAAAGCTAACCATGGA
TAA

Upstream 100 bases:

>100_bases
TTTTAACCGTACTTTTATTGCAGTCGGAAAAATTCAGACATCAGTTGTCTGGCTTATTTAAATTACGTGTGTTCAAGGGC
ACAACGGCTGGAGACAAGAA

Downstream 100 bases:

>100_bases
TATAATCTCGAAAACTAACGCAAAATTCGGTCTGTTATCAGCCTTTATTACCTCAATGCTGTTGCCTGTGTGTGCAGCGA
GTTCCTCGCCCGTTCTAGCG

Product: inner membrane ABC transporter permease YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MMSKRFIPLWITASLLLVMFLIGALQFEGFASVRVVTNLFRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVLSSVL
ITQYQWHPLLAFALILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGIATTVSEESIAIDHPFYDVIADLSIALPGN
GSLDISSLIFIVFFAIIATMMHYSRFGTNVYALGGNAQSAELMGVSIAKTTISIYALSSFLATLAGIIFTFYTFSGYSLG
AVGVELDAIAAVVIGGTLLTGGSGFILGTVLGVFLMGVIQTYITFDGTLSSWWTKIVIGLLLFFFIVLQKLLNGRKANHG

Sequences:

>Translated_320_residues
MMSKRFIPLWITASLLLVMFLIGALQFEGFASVRVVTNLFRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVLSSVL
ITQYQWHPLLAFALILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGIATTVSEESIAIDHPFYDVIADLSIALPGN
GSLDISSLIFIVFFAIIATMMHYSRFGTNVYALGGNAQSAELMGVSIAKTTISIYALSSFLATLAGIIFTFYTFSGYSLG
AVGVELDAIAAVVIGGTLLTGGSGFILGTVLGVFLMGVIQTYITFDGTLSSWWTKIVIGLLLFFFIVLQKLLNGRKANHG
>Mature_320_residues
MMSKRFIPLWITASLLLVMFLIGALQFEGFASVRVVTNLFRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVLSSVL
ITQYQWHPLLAFALILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGIATTVSEESIAIDHPFYDVIADLSIALPGN
GSLDISSLIFIVFFAIIATMMHYSRFGTNVYALGGNAQSAELMGVSIAKTTISIYALSSFLATLAGIIFTFYTFSGYSLG
AVGVELDAIAAVVIGGTLLTGGSGFILGTVLGVFLMGVIQTYITFDGTLSSWWTKIVIGLLLFFFIVLQKLLNGRKANHG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=309, Percent_Identity=56.957928802589, Blast_Score=329, Evalue=1e-91,
Organism=Escherichia coli, GI1788896, Length=327, Percent_Identity=33.0275229357798, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=34.8837209302326, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI145693152, Length=271, Percent_Identity=32.8413284132841, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=29.4314381270903, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787794, Length=256, Percent_Identity=29.296875, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=32.1167883211679, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=30.1204819277108, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=31.5384615384615, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=29.7202797202797, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34119; Mature: 34119

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKRFIPLWITASLLLVMFLIGALQFEGFASVRVVTNLFRDNAFLLITALGMTLVIISG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEC
GIDLSVGAVIALSGVLSSVLITQYQWHPLLAFALILPLGTLFGALMGTIIHVYKLQPFIV
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGMFLARGIATTVSEESIAIDHPFYDVIADLSIALPGNGSLDISSLIFIVFFAIIATM
HHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHH
MHYSRFGTNVYALGGNAQSAELMGVSIAKTTISIYALSSFLATLAGIIFTFYTFSGYSLG
HHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVGVELDAIAAVVIGGTLLTGGSGFILGTVLGVFLMGVIQTYITFDGTLSSWWTKIVIGL
CCCHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLFFFIVLQKLLNGRKANHG
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMSKRFIPLWITASLLLVMFLIGALQFEGFASVRVVTNLFRDNAFLLITALGMTLVIISG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEC
GIDLSVGAVIALSGVLSSVLITQYQWHPLLAFALILPLGTLFGALMGTIIHVYKLQPFIV
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGMFLARGIATTVSEESIAIDHPFYDVIADLSIALPGNGSLDISSLIFIVFFAIIATM
HHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHH
MHYSRFGTNVYALGGNAQSAELMGVSIAKTTISIYALSSFLATLAGIIFTFYTFSGYSLG
HHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVGVELDAIAAVVIGGTLLTGGSGFILGTVLGVFLMGVIQTYITFDGTLSSWWTKIVIGL
CCCHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLFFFIVLQKLLNGRKANHG
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]