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The map label for this gene is qseB [H]

Identifier: 120598744

GI number: 120598744

Start: 2226035

End: 2226694

Strand: Direct

Name: qseB [H]

Synonym: Sputw3181_1929

Alternate gene names: 120598744

Gene position: 2226035-2226694 (Clockwise)

Preceding gene: 120598743

Following gene: 120598745

Centisome position: 47.28

GC content: 41.52

Gene sequence:

>660_bases
ATGCGCATTATGTTAGTTGAAGATAATGAATTACTTGCACAGGGTATTTGCCTTAGTTTGGCAAAGCTGGGTATGCAAGT
TGATCATCTCAACAGTTATCAACAAGCCTTACAAGGCGTTAAAAATGAGACCTTTAGCGCAATCGTTCTCGATCTTGGGT
TACCCGATGGTAATGGAAAAGATCTTCTGAAAGCTTGGCGTCAACAGGGGATCTCAATCCCAACGATAGTGCTTACCGCT
AATACCAATTTCGACACTAAACTTGAGTGTCTGGATATGGGAGCCGATGATTATCTAGGCAAACCTTTTGATGTCAGAGA
GTTGGCCGCACGTATTCGAGCGATAGTAAGACGTCAGTATGGATTAGATCATAACAGTTTGATAGTGGGGGCTTTATGTA
TTGATTTAAACACCCGTGATGTGACTTTTAGAGAGCAAAACATTCAGCTTTCAAGGCGAGAGTTTCAACTTTTGTTGGAA
CTAGCACAATCGGCAGGGCGAGTATTGACTCGTGGTCAGTTGGAACAATTGACCTATGGTTGGGATGAGGTTGGCAGTAA
TTCAATTGAAGTGCATATTCACCATTTACGTAAAAAACTCGCTAATGAACTGATAAAAACGGTCCGTGGTATTGGTTATA
CCCTGATTGAAATGCACTAA

Upstream 100 bases:

>100_bases
GGAATGCTTGCAACAATGGCGATGTTGCAAGGCGCTGATGCTGAAGTTTTTTTGACGCAACAATGTGTTAAATACAGTAT
TTTTAGATAGGATAAAGCGA

Downstream 100 bases:

>100_bases
CTAGAGTAATAGCGTGATATACCTCAGTTTATAGTATGTAGTTGGCAATTTGAGAGAATGAGAATTTCACCGTGAACCGA
TTAAAGAAGCTGAACACGTA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGKDLLKAWRQQGISIPTIVLTA
NTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLE
LAQSAGRVLTRGQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEMH

Sequences:

>Translated_219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGKDLLKAWRQQGISIPTIVLTA
NTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLE
LAQSAGRVLTRGQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEMH
>Mature_219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGKDLLKAWRQQGISIPTIVLTA
NTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLE
LAQSAGRVLTRGQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEMH

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=43.5779816513761, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=41.0138248847926, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=34.4036697247706, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=32.7354260089686, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=34.2342342342342, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=34.8017621145374, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.8181818181818, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=30.9417040358744, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=30.7017543859649, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI2367329, Length=177, Percent_Identity=38.4180790960452, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=32.2869955156951, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=26.5765765765766, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=26.8722466960352, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=32.618025751073, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24665; Mature: 24665

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH
DLLKAWRQQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
GLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQLEQLTYG
CCCCCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEMH
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH
DLLKAWRQQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
GLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQLEQLTYG
CCCCCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEMH
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]