| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yceA [C]
Identifier: 120598696
GI number: 120598696
Start: 2164687
End: 2165691
Strand: Direct
Name: yceA [C]
Synonym: Sputw3181_1881
Alternate gene names: 120598696
Gene position: 2164687-2165691 (Clockwise)
Preceding gene: 120598694
Following gene: 120598697
Centisome position: 45.98
GC content: 43.48
Gene sequence:
>1005_bases ATGACTAAAGTTGTTGTGTGTGCGTTATATAAGTTTGTGTCGTTGCCGCATTTTGAATCTATCCGAGCACCTTTGCTCGC TATGATGGAACAGGCTGAGGTCAAAGGTACGCTGCTACTCGCAAGTGAAGGGATCAATGGCACGGTTGCTGGCAACCAAG AGGCTATCGAAGCCTTATTAGCGTGGCTCAATAATCAAAATGGTCTAGACAATATTGTTTACAAGTTATCATTCGACGAT GAAATGCCGTTTTACCGCACTAAAGTTAAACTGAAAAACGAAATTGTGACTATGGGTGTGGAAGGGATTGATCCACTAAA AGTGGTTGGCACTTACGTTAAACCTAAGGATTGGAATGCGCTGATTTCTGATCCTGATGTGATTTTAGTCGATACTCGTA ATGATTATGAGGTACAGATCGGAACCTTCAAAAATGCCATTAACCCTGTCACTGAAACCTTTAGAGAATTCCCAGAATAC GTAAAGCAGAACCTTGATCCTGTCAAACATAAAAAGGTGGCGATGTTTTGTACAGGTGGCATTCGTTGCGAAAAGTCAAC GGCCTATTTGAAGGAGCAAGGTTTTGAGGAGGTGTATCATCTTGAAGGCGGTATTCTTAAATACTTGGAGGAAGTCAAAC AAGAAGAAAGCCTATGGGAAGGCGAGTGCTTTGTGTTTGATAATCGTGTTGCCGTTAACCATGAGTTGAAGAAAGGCCAG TACGATCAATGCAATGCTTGCCGTATGCCGATCACTGAAGCCGAAAAACGCAGTCCTGCCTATGTGCAGGGTGTCAGTTG TCCTCATTGTGTCGATAAAATTTCTGATGAGCAGCGCAAGCGTTTTGTCGAGCGCGAACGTCAAGTTAATCTCGCCAAGG CAAGAAACGAAGCGCATATCGGTAGCGACGTAAATCAAGTGATTGAAGCGCGTCGAGAGAAGAAAGAAGCGCTACGTAAA CTCGCCGCACAAAAAAATAAACTAAAGCAAACTGGCACAGTTTAA
Upstream 100 bases:
>100_bases TCAGGTAAAATTTCGCGCTATTTTGCGATCTGTCGCAAATTCATCGTTTATTTTAAGTTCATGCACTGGAAATTAAGTTC CAGCCAGCAAAGAGGGTGTT
Downstream 100 bases:
>100_bases TGAGTGTACGACTATTAAGGTGAAAACCAATTGAGAGATGGCCCGACTTGTTCGGGCTATTTTTTTACTTCAGATTTGTA TTTTTAGTATAAATTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MTKVVVCALYKFVSLPHFESIRAPLLAMMEQAEVKGTLLLASEGINGTVAGNQEAIEALLAWLNNQNGLDNIVYKLSFDD EMPFYRTKVKLKNEIVTMGVEGIDPLKVVGTYVKPKDWNALISDPDVILVDTRNDYEVQIGTFKNAINPVTETFREFPEY VKQNLDPVKHKKVAMFCTGGIRCEKSTAYLKEQGFEEVYHLEGGILKYLEEVKQEESLWEGECFVFDNRVAVNHELKKGQ YDQCNACRMPITEAEKRSPAYVQGVSCPHCVDKISDEQRKRFVERERQVNLAKARNEAHIGSDVNQVIEARREKKEALRK LAAQKNKLKQTGTV
Sequences:
>Translated_334_residues MTKVVVCALYKFVSLPHFESIRAPLLAMMEQAEVKGTLLLASEGINGTVAGNQEAIEALLAWLNNQNGLDNIVYKLSFDD EMPFYRTKVKLKNEIVTMGVEGIDPLKVVGTYVKPKDWNALISDPDVILVDTRNDYEVQIGTFKNAINPVTETFREFPEY VKQNLDPVKHKKVAMFCTGGIRCEKSTAYLKEQGFEEVYHLEGGILKYLEEVKQEESLWEGECFVFDNRVAVNHELKKGQ YDQCNACRMPITEAEKRSPAYVQGVSCPHCVDKISDEQRKRFVERERQVNLAKARNEAHIGSDVNQVIEARREKKEALRK LAAQKNKLKQTGTV >Mature_333_residues TKVVVCALYKFVSLPHFESIRAPLLAMMEQAEVKGTLLLASEGINGTVAGNQEAIEALLAWLNNQNGLDNIVYKLSFDDE MPFYRTKVKLKNEIVTMGVEGIDPLKVVGTYVKPKDWNALISDPDVILVDTRNDYEVQIGTFKNAINPVTETFREFPEYV KQNLDPVKHKKVAMFCTGGIRCEKSTAYLKEQGFEEVYHLEGGILKYLEEVKQEESLWEGECFVFDNRVAVNHELKKGQY DQCNACRMPITEAEKRSPAYVQGVSCPHCVDKISDEQRKRFVERERQVNLAKARNEAHIGSDVNQVIEARREKKEALRKL AAQKNKLKQTGTV
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain
Homologues:
Organism=Homo sapiens, GI111038120, Length=279, Percent_Identity=33.3333333333333, Blast_Score=136, Evalue=3e-32, Organism=Escherichia coli, GI1787294, Length=304, Percent_Identity=30.2631578947368, Blast_Score=145, Evalue=4e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1881_SHESW (A1RJ71)
Other databases:
- EMBL: CP000503 - RefSeq: YP_963270.1 - ProteinModelPortal: A1RJ71 - STRING: A1RJ71 - GeneID: 4660248 - GenomeReviews: CP000503_GR - KEGG: shw:Sputw3181_1881 - eggNOG: COG1054 - HOGENOM: HBG366219 - OMA: IVHKLSF - ProtClustDB: PRK00142 - HAMAP: MF_00469 - InterPro: IPR001763 - InterPro: IPR020936 - Gene3D: G3DSA:3.40.250.10 - SMART: SM00450
Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like
EC number: NA
Molecular weight: Translated: 37950; Mature: 37819
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS50206 RHODANESE_3
Important sites: ACT_SITE 177-177
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVVVCALYKFVSLPHFESIRAPLLAMMEQAEVKGTLLLASEGINGTVAGNQEAIEALL CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHH AWLNNQNGLDNIVYKLSFDDEMPFYRTKVKLKNEIVTMGVEGIDPLKVVGTYVKPKDWNA HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCCCCC LISDPDVILVDTRNDYEVQIGTFKNAINPVTETFREFPEYVKQNLDPVKHKKVAMFCTGG EECCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEECCC IRCEKSTAYLKEQGFEEVYHLEGGILKYLEEVKQEESLWEGECFVFDNRVAVNHELKKGQ EEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECEEEECCHHCCCC YDQCNACRMPITEAEKRSPAYVQGVSCPHCVDKISDEQRKRFVERERQVNLAKARNEAHI CCCCCCCCCCCCHHHCCCCCEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHC GSDVNQVIEARREKKEALRKLAAQKNKLKQTGTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKVVVCALYKFVSLPHFESIRAPLLAMMEQAEVKGTLLLASEGINGTVAGNQEAIEALL CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHH AWLNNQNGLDNIVYKLSFDDEMPFYRTKVKLKNEIVTMGVEGIDPLKVVGTYVKPKDWNA HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCCCCC LISDPDVILVDTRNDYEVQIGTFKNAINPVTETFREFPEYVKQNLDPVKHKKVAMFCTGG EECCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEECCC IRCEKSTAYLKEQGFEEVYHLEGGILKYLEEVKQEESLWEGECFVFDNRVAVNHELKKGQ EEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECEEEECCHHCCCC YDQCNACRMPITEAEKRSPAYVQGVSCPHCVDKISDEQRKRFVERERQVNLAKARNEAHI CCCCCCCCCCCCHHHCCCCCEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHC GSDVNQVIEARREKKEALRKLAAQKNKLKQTGTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA