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The map label for this gene is ycfJ [C]

Identifier: 120598602

GI number: 120598602

Start: 2056894

End: 2057364

Strand: Direct

Name: ycfJ [C]

Synonym: Sputw3181_1786

Alternate gene names: 120598602

Gene position: 2056894-2057364 (Clockwise)

Preceding gene: 120598598

Following gene: 120598603

Centisome position: 43.69

GC content: 46.5

Gene sequence:

>471_bases
ATGTGGAAACCTACTCTAGCAAGCTTTATGTTTATTTTTGCCTTTCTATTAACTCCTGCCAATGCAGCCTACGACCGCAA
TCAAGCCGTCCCTGTAGAGAAAGTCCTCTATGGTGATGTCACCTCTGTGCGCAATATCACAGAAACTCAGCTTATCGAAG
ACAGAAACCAAGGTTGGAAAACCTTTGGTGGTGCATTAGTTGGTGGGGTGATTGGCCATCAGTTTGGTGGCGGTTCAGGC
CGCGATGTAGCAACAATTTTAGGCGCTCTTATCGGCGGCGGTATTGGTAATCGTTATGGCAGTGGTACGAGTGTGCAATC
GTTTAAGCTGGTGGAATTGATGATCAATCAAGAAGATGGCACCCAAGTTATGGTTATCCAAGATTATGATCCCGGAATGG
TATTTAATGCGGGTGACCGAGTGCGAGTCGTATACCTTCAAGGTGGTGTTCGCATTGACTTAGCCATGTAG

Upstream 100 bases:

>100_bases
AAGGAAAAGCTTCAAATTCGTGATTCAGAAAAGACAGTGACTTCACAATTGCGTATGATTCAGTAATAAACCCTTCTACT
AAGTTAGCGGAAATTCGGAT

Downstream 100 bases:

>100_bases
GTTGAGACAATCATCTTTAACAATTAATGCATGTGGTGATGACATGACACGGACAGAATTGGGTCAATATTTAGCAGACT
TTTTACGGGTAGCCGCATTT

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: Outer Membrane Protein; Outer Membrane Lipoprotein; Surface Antigen

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MWKPTLASFMFIFAFLLTPANAAYDRNQAVPVEKVLYGDVTSVRNITETQLIEDRNQGWKTFGGALVGGVIGHQFGGGSG
RDVATILGALIGGGIGNRYGSGTSVQSFKLVELMINQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRIDLAM

Sequences:

>Translated_156_residues
MWKPTLASFMFIFAFLLTPANAAYDRNQAVPVEKVLYGDVTSVRNITETQLIEDRNQGWKTFGGALVGGVIGHQFGGGSG
RDVATILGALIGGGIGNRYGSGTSVQSFKLVELMINQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRIDLAM
>Mature_156_residues
MWKPTLASFMFIFAFLLTPANAAYDRNQAVPVEKVLYGDVTSVRNITETQLIEDRNQGWKTFGGALVGGVIGHQFGGGSG
RDVATILGALIGGGIGNRYGSGTSVQSFKLVELMINQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRIDLAM

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787353, Length=72, Percent_Identity=45.8333333333333, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16793; Mature: 16793

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKPTLASFMFIFAFLLTPANAAYDRNQAVPVEKVLYGDVTSVRNITETQLIEDRNQGWK
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHHHCCCCHH
TFGGALVGGVIGHQFGGGSGRDVATILGALIGGGIGNRYGSGTSVQSFKLVELMINQEDG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEEEECCCCC
TQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRIDLAM
CEEEEEEECCCCEEEECCCCEEEEEEECCEEEEEEC
>Mature Secondary Structure
MWKPTLASFMFIFAFLLTPANAAYDRNQAVPVEKVLYGDVTSVRNITETQLIEDRNQGWK
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHHHCCCCHH
TFGGALVGGVIGHQFGGGSGRDVATILGALIGGGIGNRYGSGTSVQSFKLVELMINQEDG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEEEEEECCCCC
TQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRIDLAM
CEEEEEEECCCCEEEECCCCEEEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA