| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598564
Identifier: 120598564
GI number: 120598564
Start: 2011041
End: 2011490
Strand: Direct
Name: 120598564
Synonym: Sputw3181_1747
Alternate gene names: NA
Gene position: 2011041-2011490 (Clockwise)
Preceding gene: 120598563
Following gene: 120598565
Centisome position: 42.71
GC content: 41.33
Gene sequence:
>450_bases ATGAGCCAAAAACTCGCGATTATTATGCGTGGTTTGCCTGGAAGCGGTAAATCTTATTGGGTTGAGCAGTATATTGCCAA CTTACCTTTGGATATGGCTTTTCGTCTGCGTCAATATGGACTTTTTTCAACCGATACATTTTTCTATCAGGGTAATGAAT ATCGTTTTGATGCGAAAAAATTGCCTGAATACCATCAACGTAATTTAACCGCGTTTATCCAAGCTCTCGTATCGAATGAG CCTATTGTTATCTGCGATAACACTAATCTTTGTCACTGGGAATATATGGCCTATGATGCCGTGGCAAAAGCGCTTGGCTA TCAAGTACGCATTGTACTTGTGGGCGAGCCGTTGAATACTGAGCATCAACGATTATGTGCTGAGCGTAATCGTCATCATG TTTCCCTTGCGCATATTCAACGTATGGCAACAGCATTTGATGCGTTTTAA
Upstream 100 bases:
>100_bases AATTTCAATATCACCTTACAGGCAAAGCGGGTGATATAGTGCCTAGGCTTGTTGATACCATTTTGGCAGGTAAAGTGATT GGTAGCGACTTGGTGACAAT
Downstream 100 bases:
>100_bases TCGATATTGTAATGAATCATCCTATGATAGCGTTCTTCTTTTTGTCACCTATTCCTTTTAAGCTTGATCTTACAGGCAGT TTATCCATTTTGACTCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSQKLAIIMRGLPGSGKSYWVEQYIANLPLDMAFRLRQYGLFSTDTFFYQGNEYRFDAKKLPEYHQRNLTAFIQALVSNE PIVICDNTNLCHWEYMAYDAVAKALGYQVRIVLVGEPLNTEHQRLCAERNRHHVSLAHIQRMATAFDAF
Sequences:
>Translated_149_residues MSQKLAIIMRGLPGSGKSYWVEQYIANLPLDMAFRLRQYGLFSTDTFFYQGNEYRFDAKKLPEYHQRNLTAFIQALVSNE PIVICDNTNLCHWEYMAYDAVAKALGYQVRIVLVGEPLNTEHQRLCAERNRHHVSLAHIQRMATAFDAF >Mature_148_residues SQKLAIIMRGLPGSGKSYWVEQYIANLPLDMAFRLRQYGLFSTDTFFYQGNEYRFDAKKLPEYHQRNLTAFIQALVSNEP IVICDNTNLCHWEYMAYDAVAKALGYQVRIVLVGEPLNTEHQRLCAERNRHHVSLAHIQRMATAFDAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7656971, Length=145, Percent_Identity=33.1034482758621, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357685, Length=144, Percent_Identity=31.9444444444444, Blast_Score=63, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17293; Mature: 17162
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKLAIIMRGLPGSGKSYWVEQYIANLPLDMAFRLRQYGLFSTDTFFYQGNEYRFDAKK CCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCEEEECHHH LPEYHQRNLTAFIQALVSNEPIVICDNTNLCHWEYMAYDAVAKALGYQVRIVLVGEPLNT CCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCH EHQRLCAERNRHHVSLAHIQRMATAFDAF HHHHHHHHCCCCEEHHHHHHHHHHHHCCC >Mature Secondary Structure SQKLAIIMRGLPGSGKSYWVEQYIANLPLDMAFRLRQYGLFSTDTFFYQGNEYRFDAKK CCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCEEEECHHH LPEYHQRNLTAFIQALVSNEPIVICDNTNLCHWEYMAYDAVAKALGYQVRIVLVGEPLNT CCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCH EHQRLCAERNRHHVSLAHIQRMATAFDAF HHHHHHHHCCCCEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA