Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 120598524

GI number: 120598524

Start: 1964778

End: 1965107

Strand: Direct

Name: ybaB [C]

Synonym: Sputw3181_1707

Alternate gene names: 120598524

Gene position: 1964778-1965107 (Clockwise)

Preceding gene: 120598523

Following gene: 120598525

Centisome position: 41.73

GC content: 45.76

Gene sequence:

>330_bases
ATGTTTGGAAAAGGCGGTATGGGCAATCTGATGAAACAAGCCCAGATGATGCAAGAAAAAATGGCGAAGATGCAGGAAGA
AATTGCTCGCATGGAAATGGTGGGCGAATCGGGTGCAGGTCTAGTCAAAGTCACTATGACGGGTGCACACACAGTGCGTA
AAGTCGAAATCGACCCAAGTTTGATGGAAGACGATAAAGAAATGCTGGAAGATTTGATTGCTGCGGCCTGTAACGATGCA
GCACGTCGAATCGAAGAGAATCAAAAAGCTAAAATGGCTGAAGTGACTGGCGGTATGCAATTACCACCAGGCATGAAAAT
GCCGTTTTAA

Upstream 100 bases:

>100_bases
TTATTAATGGGATCACGGCATAGATTGCCAATCCCATTAATTTCAGTAAGATTAGCCAGCTTTAAAGCTTGCGACTAACC
CTAATAGAAGAGAAAAGACT

Downstream 100 bases:

>100_bases
TTGAGATAAGCAATGAAATTCAGTCCACTGCTTGACGAGTTAATTCAATCCCTGCGTTGTTTACCTGGGGTCGGACCTAA
ATCGGCACAACGTATGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPSLMEDDKEMLEDLIAAACNDA
ARRIEENQKAKMAEVTGGMQLPPGMKMPF

Sequences:

>Translated_109_residues
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPSLMEDDKEMLEDLIAAACNDA
ARRIEENQKAKMAEVTGGMQLPPGMKMPF
>Mature_109_residues
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPSLMEDDKEMLEDLIAAACNDA
ARRIEENQKAKMAEVTGGMQLPPGMKMPF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family [H]

Homologues:

Organism=Escherichia coli, GI1786677, Length=109, Percent_Identity=80.7339449541284, Blast_Score=182, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004401 [H]

Pfam domain/function: PF02575 DUF149 [H]

EC number: NA

Molecular weight: Translated: 11968; Mature: 11968

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
14.7 %Met     (Translated Protein)
15.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
14.7 %Met     (Mature Protein)
15.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCH
LMEDDKEMLEDLIAAACNDAARRIEENQKAKMAEVTGGMQLPPGMKMPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCH
LMEDDKEMLEDLIAAACNDAARRIEENQKAKMAEVTGGMQLPPGMKMPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]