| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is dsbA [H]
Identifier: 120598466
GI number: 120598466
Start: 1890284
End: 1890907
Strand: Direct
Name: dsbA [H]
Synonym: Sputw3181_1649
Alternate gene names: 120598466
Gene position: 1890284-1890907 (Clockwise)
Preceding gene: 120598465
Following gene: 120598467
Centisome position: 40.15
GC content: 43.27
Gene sequence:
>624_bases ATGAGCACGTTAAATATTATTGTTAGACCACTGATGTCCCTTGCCTTCGGGTTCATACTCAGTGCCAGTTTTACCTTACA GGCGGCTAATTTTGAGGAAGGTAAAGATTATGTAACAGTGACGGGGATTTCTGAGGCACAACAGCCAGTGTTAAGAGAGT TTTTTTCTTATAACTGTCCGCATTGCTATAACCAAGAGCCCTTAATTGAATCGACCGTTACTTTACTCGGTAAAGAGATC CATTTTGAGCGTACTCCCGTTGGTGCCGGTCGTCCAAGTTGGCAATTGAGCCAGTTAGCCTATTATGTGGCACAAAAACT GAACATGACAAAGCAAACCCATGGTGCCATTTTTAAACAAATCCAAGTGAATGCAGAGCAATTTACTCGCCCAGAACAAG TGAAGGCTTTTTTTGTCTCCCAAGGTGCTAAAGCTGAGGATGTAGAGGCTACAATCAATTCAGTTGATGCCCAATTCACG CTAATGAACTACGACTCTCAAGCTGAGCTTGCAGGTATTAAAGGCGTCCCTTCATTATTGGTTAATGGCCGTTACATGTT GACGTCAACCGCGCATACACCTGAAGAATTGGCGGCGTTAGTTAAGTTTTTAGCGGCGAAATAA
Upstream 100 bases:
>100_bases TTTTAAGAGATAAGCGGGCACTTAGGTGGTTTTTATGGCCTAGGATTGGCTCGGTAAATGGTTTTTTTTAATCAAATGAC AAAATAAAAGAGATAGTATA
Downstream 100 bases:
>100_bases CGACATTTCATAGATGGATGGTATGCGATGAAAGCGGCTTTTTGCGAGTATCGTATAGTCACGTTTCCTCAAGGTAGATT GAATAACCCAGCATAGACTG
Product: DSBA oxidoreductase
Products: 3-oxo-D 4-steroid; protein with oxidized disulfide bonds [C]
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MSTLNIIVRPLMSLAFGFILSASFTLQAANFEEGKDYVTVTGISEAQQPVLREFFSYNCPHCYNQEPLIESTVTLLGKEI HFERTPVGAGRPSWQLSQLAYYVAQKLNMTKQTHGAIFKQIQVNAEQFTRPEQVKAFFVSQGAKAEDVEATINSVDAQFT LMNYDSQAELAGIKGVPSLLVNGRYMLTSTAHTPEELAALVKFLAAK
Sequences:
>Translated_207_residues MSTLNIIVRPLMSLAFGFILSASFTLQAANFEEGKDYVTVTGISEAQQPVLREFFSYNCPHCYNQEPLIESTVTLLGKEI HFERTPVGAGRPSWQLSQLAYYVAQKLNMTKQTHGAIFKQIQVNAEQFTRPEQVKAFFVSQGAKAEDVEATINSVDAQFT LMNYDSQAELAGIKGVPSLLVNGRYMLTSTAHTPEELAALVKFLAAK >Mature_206_residues STLNIIVRPLMSLAFGFILSASFTLQAANFEEGKDYVTVTGISEAQQPVLREFFSYNCPHCYNQEPLIESTVTLLGKEIH FERTPVGAGRPSWQLSQLAYYVAQKLNMTKQTHGAIFKQIQVNAEQFTRPEQVKAFFVSQGAKAEDVEATINSVDAQFTL MNYDSQAELAGIKGVPSLLVNGRYMLTSTAHTPEELAALVKFLAAK
Specific function: Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1790291, Length=203, Percent_Identity=26.6009852216749, Blast_Score=67, Evalue=6e-13,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 1348 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR023205 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 22918; Mature: 22787
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLNIIVRPLMSLAFGFILSASFTLQAANFEEGKDYVTVTGISEAQQPVLREFFSYNCP CCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCC HCYNQEPLIESTVTLLGKEIHFERTPVGAGRPSWQLSQLAYYVAQKLNMTKQTHGAIFKQ CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH IQVNAEQFTRPEQVKAFFVSQGAKAEDVEATINSVDAQFTLMNYDSQAELAGIKGVPSLL HCCCHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCHHHH VNGRYMLTSTAHTPEELAALVKFLAAK HCCEEEEEECCCCHHHHHHHHHHHHCC >Mature Secondary Structure STLNIIVRPLMSLAFGFILSASFTLQAANFEEGKDYVTVTGISEAQQPVLREFFSYNCP CHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCC HCYNQEPLIESTVTLLGKEIHFERTPVGAGRPSWQLSQLAYYVAQKLNMTKQTHGAIFKQ CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH IQVNAEQFTRPEQVKAFFVSQGAKAEDVEATINSVDAQFTLMNYDSQAELAGIKGVPSLL HCCCHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCHHHH VNGRYMLTSTAHTPEELAALVKFLAAK HCCEEEEEECCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-oxo-D 5-steroid; protein with reduced SH groups [C]
Specific reaction: 3-oxo-D 5-steroid = 3-oxo-D 4-steroid protein with reduced SH groups = protein with oxidized disulfide bonds [C]
General reaction: Isomerases; Intramolecular Oxidoreductases; Transposing S-S Bonds [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA