| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598430
Identifier: 120598430
GI number: 120598430
Start: 1837783
End: 1840257
Strand: Direct
Name: 120598430
Synonym: Sputw3181_1613
Alternate gene names: NA
Gene position: 1837783-1840257 (Clockwise)
Preceding gene: 120598428
Following gene: 120598431
Centisome position: 39.03
GC content: 46.51
Gene sequence:
>2475_bases ATGAAAAGACTCATTTTGGGTGTTGCGATTGCATCTGCACTAGGCCTCACAGGATGTGGCGAGGACAGCTATAACGAACT CAAGGATAAGACGGAAGTGCTCATCCCTGAATCGCGTATGGTGTTTGACCCTGCCAACGCTAAAGTTCCATTACCAAATG ATTTGCTGTTCAGTGGCACGACTGACGGCACATTAGCGATCCCTGGCGAAAGTTCGGGTAATTATGTTGACCCACAAATT GCCCTAGGGGCCTTAGATGGTTGGTCAACAACATCACCAATTTCTATTGATATCGATTTAGCGAAAAAACATGACGGGAC ACCACTGACCTTAATGGCTGCATCGGTTGCACAGCCGGGCGCGGTGAGAATGTTTGAGGCCACTGTAGGCGGTGCACTAT CGTCTGATCCCGAATGTAAGGCTAAACCGTCTGTTTCAGCCTGTAAAGTTGGCGCAGAACTGCAGTTTGGTGTTGACTTT GTATCAACCGCATCGGGCAACAAAGTGGTCATCGTACCGCTTAAGCCACTTAAAGCAGGCCAATCCTACATCTATGCGAC GACCAATCTTATTCAAGATTCTGAAGGTCGTGGTATTGCGCCTTCAACAACCTATGGTTTGTTGAAGATGGATATCAATA CGTTACCACTGGAAACGCCTGATCAACTGATGTTGCAAACCTTAGTCAACAGTTATGAAAAAGGGATTGCTGCCGCCCAT AATGTAGACACTACCACGATTAATTATGCAGGACTATTTACCACCCAATCAGTGGCAAATGTCTATGAAACTACTAAGTT ATTGATGGCCCAAGGTGCGCCATATGCCCCAAGTTTTGCCCAAATGCCAACACCAACAGGATTGACTGTTGCACAAGTGG CGGGGATAACAGATCAAACCAGTCCAGCATATGTCGTTGCAAACTTGGCTGATGTTTATACTGCGAAAATTAAACTCCCC ATTTACGGTGATTGTTCTTCTGTCAGTTGTTTATCTTCTTCAGGACAACCATTAATTAATGGTCGTTGGAAAGCCCAAGG TGATAGTCCAGTTTCTGTGTTATTAGCATTGCAAGCGGGAACGTTGAGCCAAACTAACTTTGGTATGCAAGCTGTGGCTA ACGGTATTGCCAATCCCGCTGATGCCTTGGCAAATCCTTCGTTAATGGCGGGTAAAACTTGGTTGTTAGATGATGGCACT GCGGTAGATAAGACTAAACATCTGACTAAGTTCAATCCTATCCCCGAGATTAAGGGATATGAAACGGTCCCCGTGCTGAT TTCAATGCCTAACCCGACAAAATTGGCCGCATTTTATCAGCAGCAGGGTAAAACCTTTACACAACCAGCGGCCGGCTGGC CAACAACGCTTGCACTGCATGGTTTAGGTGGCGGTAAAGAGATGTCACTCGCCTATGCTGGCAGCTATGCGGCTATGGGC GTCGCAACCATTGCTATTGATATGCCGCTCCATGGAGCGCGTTCATTCGATGCTAACGGTGATGGTATTTATGAAGTCAC TGCAACCGATCCTGCCTTCGGTGCAGTTGTGGGTAACTCGGAAGCCTTTAAAAATGGTAACCCGTTGGTGTTTGTGAATA TTTCTAGCACGCTATCGGTGCGAGATAATTTCCGTCAAGCGACGATGGACCATTTAGGTGTAAGGCTGGCACTGACTGGA TTAGCACAAGGGTTAGCACAGGCTGGACAGCCGCAACTTTTTGATGTTTATAACATCAGTGTACAAGGGCTTAGCTTAGG TGCGATAGTTGGTACCGATTTTGCGACCTATGCCAGTACAGGCATGAAACATCCAACGACGGGCGAGGCGTTACAAAATG CCTATGCTATCAAGGCTGCATCCTTAGTTGCTCCTGCTGGTGGCTTAGCGGGCGCATTTGCAGGTTCTGCAACCTTTGCT CCTGTACTGTTTAGTAATATTACGGCATCTACCACCTTCAAAGCGCTAGTGGATAAGGCTAATACCGCAGGTTATGAAGT CGGTAGCCCTGAATATGCGGCATTAGTACAAGCGGTTTACGCGCAATTTATTCCAACCTTTGCTTTTGCAGTACAAACTG CGATTGACTCGGCGGATCCTGTTAACCATGCTGCTATGTTAAAAGCGACTGGTTTACCTGTACATCTTATTGAAGTCGCG GGAGATGGTAATGGTAACTTAGGTGATCAGGTCCTACCAAACCGTGTGGATAATTTCCCATTATCCGGAACCGAACCTCT GATTGCTTCATTAGGTTTACCTTGTGTTGATAGCACAACTAAAGGAAAAGGTGTAGTTCGTTTTGCTAAAGGTCATCATA GTTCGCTTGTTGATCCTAAAGAAAAGGAATCAACGGATGGTTTGGCAGCCGCTGCAACGGTTGAAATGCAAACCCAAGTA GCAACCTATGCCGCCAGTGGTGATGCAACCATTTTAGTGACAAACAGCAACGTGATTGCGACTTGTCCTAACTAA
Upstream 100 bases:
>100_bases TTAGGGGCTAACATAAGCCCTATTAGTCACAGATTTTTTGCTATTGTGACTAATTTCTTGGGGAAAACAAAACTATTACA ACAAGATTTGGGGAAAAAAG
Downstream 100 bases:
>100_bases TATTGCCTTAATCTGAAAAACCCAGCTCACGCTGGGTTTTTTTATGGGCCTTTAGGCTGTTAGAATAGCCCGCAATAAAT TAAGTGAAGAGATACGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Lipase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Superfamily Protein; Extracellular Lipase Pla-1/Cef Family
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MKRLILGVAIASALGLTGCGEDSYNELKDKTEVLIPESRMVFDPANAKVPLPNDLLFSGTTDGTLAIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKKHDGTPLTLMAASVAQPGAVRMFEATVGGALSSDPECKAKPSVSACKVGAELQFGVDF VSTASGNKVVIVPLKPLKAGQSYIYATTNLIQDSEGRGIAPSTTYGLLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTTTINYAGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGLTVAQVAGITDQTSPAYVVANLADVYTAKIKLP IYGDCSSVSCLSSSGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AVDKTKHLTKFNPIPEIKGYETVPVLISMPNPTKLAAFYQQQGKTFTQPAAGWPTTLALHGLGGGKEMSLAYAGSYAAMG VATIAIDMPLHGARSFDANGDGIYEVTATDPAFGAVVGNSEAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQAGQPQLFDVYNISVQGLSLGAIVGTDFATYASTGMKHPTTGEALQNAYAIKAASLVAPAGGLAGAFAGSATFA PVLFSNITASTTFKALVDKANTAGYEVGSPEYAALVQAVYAQFIPTFAFAVQTAIDSADPVNHAAMLKATGLPVHLIEVA GDGNGNLGDQVLPNRVDNFPLSGTEPLIASLGLPCVDSTTKGKGVVRFAKGHHSSLVDPKEKESTDGLAAAATVEMQTQV ATYAASGDATILVTNSNVIATCPN
Sequences:
>Translated_824_residues MKRLILGVAIASALGLTGCGEDSYNELKDKTEVLIPESRMVFDPANAKVPLPNDLLFSGTTDGTLAIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKKHDGTPLTLMAASVAQPGAVRMFEATVGGALSSDPECKAKPSVSACKVGAELQFGVDF VSTASGNKVVIVPLKPLKAGQSYIYATTNLIQDSEGRGIAPSTTYGLLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTTTINYAGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGLTVAQVAGITDQTSPAYVVANLADVYTAKIKLP IYGDCSSVSCLSSSGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AVDKTKHLTKFNPIPEIKGYETVPVLISMPNPTKLAAFYQQQGKTFTQPAAGWPTTLALHGLGGGKEMSLAYAGSYAAMG VATIAIDMPLHGARSFDANGDGIYEVTATDPAFGAVVGNSEAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQAGQPQLFDVYNISVQGLSLGAIVGTDFATYASTGMKHPTTGEALQNAYAIKAASLVAPAGGLAGAFAGSATFA PVLFSNITASTTFKALVDKANTAGYEVGSPEYAALVQAVYAQFIPTFAFAVQTAIDSADPVNHAAMLKATGLPVHLIEVA GDGNGNLGDQVLPNRVDNFPLSGTEPLIASLGLPCVDSTTKGKGVVRFAKGHHSSLVDPKEKESTDGLAAAATVEMQTQV ATYAASGDATILVTNSNVIATCPN >Mature_824_residues MKRLILGVAIASALGLTGCGEDSYNELKDKTEVLIPESRMVFDPANAKVPLPNDLLFSGTTDGTLAIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKKHDGTPLTLMAASVAQPGAVRMFEATVGGALSSDPECKAKPSVSACKVGAELQFGVDF VSTASGNKVVIVPLKPLKAGQSYIYATTNLIQDSEGRGIAPSTTYGLLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTTTINYAGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGLTVAQVAGITDQTSPAYVVANLADVYTAKIKLP IYGDCSSVSCLSSSGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AVDKTKHLTKFNPIPEIKGYETVPVLISMPNPTKLAAFYQQQGKTFTQPAAGWPTTLALHGLGGGKEMSLAYAGSYAAMG VATIAIDMPLHGARSFDANGDGIYEVTATDPAFGAVVGNSEAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQAGQPQLFDVYNISVQGLSLGAIVGTDFATYASTGMKHPTTGEALQNAYAIKAASLVAPAGGLAGAFAGSATFA PVLFSNITASTTFKALVDKANTAGYEVGSPEYAALVQAVYAQFIPTFAFAVQTAIDSADPVNHAAMLKATGLPVHLIEVA GDGNGNLGDQVLPNRVDNFPLSGTEPLIASLGLPCVDSTTKGKGVVRFAKGHHSSLVDPKEKESTDGLAAAATVEMQTQV ATYAASGDATILVTNSNVIATCPN
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85158; Mature: 85158
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00283 SOYBEAN_KUNITZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLILGVAIASALGLTGCGEDSYNELKDKTEVLIPESRMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHCCCEEEECCCCEEECCCCCCCCCCCCEEEECC TDGTLAIPGESSGNYVDPQIALGALDGWSTTSPISIDIDLAKKHDGTPLTLMAASVAQPG CCCEEEECCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCC AVRMFEATVGGALSSDPECKAKPSVSACKVGAELQFGVDFVSTASGNKVVIVPLKPLKAG CEEEEEEHHCCCCCCCCCCCCCCCCHHHEECCEEEECCEEEEECCCCEEEEEECCCCCCC QSYIYATTNLIQDSEGRGIAPSTTYGLLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH CEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC NVDTTTINYAGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGLTVAQVAGITDQT CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEECCCCCC SPAYVVANLADVYTAKIKLPIYGDCSSVSCLSSSGQPLINGRWKAQGDSPVSVLLALQAG CCCEEEEEHHEEEEEEEEEEEECCCCCCHHHCCCCCCEECCEEECCCCCCEEEEEEEECC TLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAVDKTKHLTKFNPIPEIKGY CCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCCHHHHHCCCCCCCCCCC ETVPVLISMPNPTKLAAFYQQQGKTFTQPAAGWPTTLALHGLGGGKEMSLAYAGSYAAMG CEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHE VATIAIDMPLHGARSFDANGDGIYEVTATDPAFGAVVGNSEAFKNGNPLVFVNISSTLSV EEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCHHCCCCCCEEEEEECCEEEH RDNFRQATMDHLGVRLALTGLAQGLAQAGQPQLFDVYNISVQGLSLGAIVGTDFATYAST HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECEEEEEEECCCHHHHHHC GMKHPTTGEALQNAYAIKAASLVAPAGGLAGAFAGSATFAPVLFSNITASTTFKALVDKA CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC NTAGYEVGSPEYAALVQAVYAQFIPTFAFAVQTAIDSADPVNHAAMLKATGLPVHLIEVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEE GDGNGNLGDQVLPNRVDNFPLSGTEPLIASLGLPCVDSTTKGKGVVRFAKGHHSSLVDPK CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC EKESTDGLAAAATVEMQTQVATYAASGDATILVTNSNVIATCPN CCCCCCCEEEEEEEEEEHEEEEEECCCCEEEEEECCCEEEECCC >Mature Secondary Structure MKRLILGVAIASALGLTGCGEDSYNELKDKTEVLIPESRMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHCCCEEEECCCCEEECCCCCCCCCCCCEEEECC TDGTLAIPGESSGNYVDPQIALGALDGWSTTSPISIDIDLAKKHDGTPLTLMAASVAQPG CCCEEEECCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCC AVRMFEATVGGALSSDPECKAKPSVSACKVGAELQFGVDFVSTASGNKVVIVPLKPLKAG CEEEEEEHHCCCCCCCCCCCCCCCCHHHEECCEEEECCEEEEECCCCEEEEEECCCCCCC QSYIYATTNLIQDSEGRGIAPSTTYGLLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH CEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC NVDTTTINYAGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGLTVAQVAGITDQT CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEECCCCCC SPAYVVANLADVYTAKIKLPIYGDCSSVSCLSSSGQPLINGRWKAQGDSPVSVLLALQAG CCCEEEEEHHEEEEEEEEEEEECCCCCCHHHCCCCCCEECCEEECCCCCCEEEEEEEECC TLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAVDKTKHLTKFNPIPEIKGY CCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCCHHHHHCCCCCCCCCCC ETVPVLISMPNPTKLAAFYQQQGKTFTQPAAGWPTTLALHGLGGGKEMSLAYAGSYAAMG CEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHE VATIAIDMPLHGARSFDANGDGIYEVTATDPAFGAVVGNSEAFKNGNPLVFVNISSTLSV EEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCHHCCCCCCEEEEEECCEEEH RDNFRQATMDHLGVRLALTGLAQGLAQAGQPQLFDVYNISVQGLSLGAIVGTDFATYAST HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECEEEEEEECCCHHHHHHC GMKHPTTGEALQNAYAIKAASLVAPAGGLAGAFAGSATFAPVLFSNITASTTFKALVDKA CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC NTAGYEVGSPEYAALVQAVYAQFIPTFAFAVQTAIDSADPVNHAAMLKATGLPVHLIEVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEE GDGNGNLGDQVLPNRVDNFPLSGTEPLIASLGLPCVDSTTKGKGVVRFAKGHHSSLVDPK CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC EKESTDGLAAAATVEMQTQVATYAASGDATILVTNSNVIATCPN CCCCCCCEEEEEEEEEEHEEEEEECCCCEEEEEECCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA