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The map label for this gene is secD

Identifier: 120598344

GI number: 120598344

Start: 1731500

End: 1733350

Strand: Direct

Name: secD

Synonym: Sputw3181_1526

Alternate gene names: 120598344

Gene position: 1731500-1733350 (Clockwise)

Preceding gene: 120598343

Following gene: 120598345

Centisome position: 36.77

GC content: 47.22

Gene sequence:

>1851_bases
GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGATGCTTATCATCGCCATAGGTTGTTTCTATGCCGTACCGAA
CCTTTTTGGTGAAGATCACGCGGTGCAAGTGGTGGCGACTCGTGGTGCAGAAGTAACTGCATCTACCCAAGCCAGAGTGA
ACGAGCTGTTAGCCGGTAAGGGCATTGCGGTAAAGCGCTCTGAGCTTGAAAAAGGCCAGTTGTTGGTTCGTGTGCAGAAC
GCGGATCAACAATTATTAGCAAAAGAAACGATCGCAGAAGATTTAGGTGATAAGTTTAGTGTTGCACTTAACTTAGCTCC
AGCAACACCGCAATGGCTCGAGTCTATGGGCGGCAGCCCAATGAAACTCGGTCTCGATCTTCGCGGCGGTGTGCACTTCT
TAATGGAAGTGGACATGGGCGAAGCGATCCGCAAGATGGAAGAGGCCAAGGTTGCTGACTTTCGTGCTCAATTACGTGAA
GAAACAATCCGTTATGCGGGCATTCGTGTTAATGCCTCTGGGATTGAGATTAAATTCCGTGATGCTGAAAGTTTAGCCAG
TGCAGAACGTTTCCTTAAATCTCGCAGTAACGATATGGTCTTCACCGATGTGAGCAAGGGTGAAGATTTTGCCCTGCAAG
CGGTGATGAGTGAAGCTTATCTTAAGCAGGTTAAAGAAGAAGCACTGCAACAAAACATTACCACTATTCGTAACCGTGTT
AATGAGTTAGGTGTTGCTGAACCTGTAGTACAGCGCCAAGGTGCAGAGCGTATTATCGTTGAACTGCCCGGTGTACAAGA
TACGGCTCGCGCTAAAGAAATTTTAGGGGCAACCGCATCGATTGAATTCCATATGGTGGATGACAAAGCCGATCCTAATG
CCGCGCAATCAGGACGTATCTCTGCAGGCTCTGAAGTGTATCAACGTCGTGAAGGCGGCCAAGTCGTATTGAAAAAAGAA
GTGATGCTAACGGGAGATCATATCACCGGCGCCCAACCTAGCTTTGATCAATACAGTCGCCCACAGGTGAGCATTAATCT
TGACGCTAAAGGCGGTACCATTTTCTCTAATGTGACGAAGGACAACATAGGTAAACCTATGGCGACCTTATTCATTGAAT
ATAAAGACAGTGGTGAACGTAACGCCGATGGCAGCGTGAAAATGCAGAAAATCCAAGAAGTGATTTCTGTGGCAACCATT
CAAGCCCGTTTAGGTCGTAACTTTGTGATCACAGGTTTAAGCCACGGTGAAGCACAAAACCTTGCTTTGCTGTTACGCGC
TGGAGCTTTGATTGCACCTGTATCCATTGTTGAAGAACGTACCATTGGTCCGAGTTTAGGCGCTGAAAATATTGAGAATG
GTGTGCAAGCCATGGTGTGGGGTATGGCCGTCGTCTTAATCTTCATGCTGGTGTACTACCGCGGTTTTGGGCTTATCGCT
AACCTCGCGTTAACTGCAAACTTAGTCATGGTTGTAGGCGTCATGTCGATGATCCCAGGCGCAGTATTGACCCTTCCCGG
TATTGCGGGGATGGTGTTGACAGTGGGGATGGCAGTTGATGGTAACGTACTCATTTATGAGCGTATTCGTGAAGAACTTC
GTGCAGGACGTAGTGTACAGCAGGCCATCCATGAAGGTTATGGTAATGCGTTTTCAACCATTGCCGATGCGAACATCACG
ACTTTCCTTACCGCATTAATTTTATTTGCTGTGGGGACTGGTGCTGTTAAAGGCTTCGCGGTGACCTTGATGATAGGTAT
TGCGACTTCCATGTTTACCTCTATCGTGGGTACTCGCTCCATCGTTAATGCGATTTGGGGTGGTAAGCGCGTGAAGACAC
TGTCTATCTAA

Upstream 100 bases:

>100_bases
GCCTTAATGACACGACGCAAATCACGATCAAGAAAGACTATATTGCAGCTGTATTGCCTAAGGGCTCTATCCAGTCGTTG
TAAGCCAAGAGGGCTCAGGC

Downstream 100 bases:

>100_bases
GGAAAAGTCATAATGCTAGAAATTTTATCCTTAAAACGTACAGTAAACTTTCTCCGCCATGCGCTGCCGATTAGTATCTT
ATCCGCGGTTCTTGTGCTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLRE
ETIRYAGIRVNASGIEIKFRDAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLRE
ETIRYAGIRVNASGIEIKFRDAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI
>Mature_616_residues
MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLRE
ETIRYAGIRVNASGIEIKFRDAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=58.252427184466, Blast_Score=727, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66492; Mature: 66492

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHCCC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETIRYAGIRVNASGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEC
DAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRI
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
SAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC
>Mature Secondary Structure
MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHCCC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETIRYAGIRVNASGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEC
DAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRI
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
SAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]