| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120598337
Identifier: 120598337
GI number: 120598337
Start: 1726424
End: 1726858
Strand: Direct
Name: 120598337
Synonym: Sputw3181_1519
Alternate gene names: NA
Gene position: 1726424-1726858 (Clockwise)
Preceding gene: 120598335
Following gene: 120598340
Centisome position: 36.67
GC content: 38.85
Gene sequence:
>435_bases ATGGGTTCTATGCTTAATGTATTACCACAACTGACTTTCACTTTAAGTGATTGGGTATTGCATAAGGATATCAGGATGTC TGGGATTGAAAAACGCCGTCGCCTTCACTGGCGGGAGACAGATATGCAAAATCGTGAAATTATTGGTCGTTGGTTAGATG AACGTCCTTTATTAGGTGACAAAATCACTCTTTATAAAGAAGACGATAAATATTTTTTAGAAACTTGGTTTAGCGATGGC TGCCACAGTTTAGACGAAGTGCTGATGACTGATACCTCAGCTGGCCATAAGGTTGAAGATGTGGGAGGGAATTTTTTTGG TGAGTATTTTATTGTTACTCCAACACAGCAACTGCAATTTTGTAATGAACAGGGGTGTTACTTCCAAGTAGACAAATTAA TGGTTGATATCGATTTTAGTCAGCGAGTCGCTTAA
Upstream 100 bases:
>100_bases TCTTTTATATTTTAAATATTTAGCAAATTTAAATTAACCAAAAAATTACATTTCACGGTCAATTTGACGTAATTTGCTTC GGTGGGGAGTAAAGAGTTAA
Downstream 100 bases:
>100_bases TGTTGTGTATTTTATTCTGTTTATAAAAGGCCGCCTTATCGCGGCCTTTGTATTGATTATTCATTAAAAGGATGTTTGCT GTGAAAGCTCATCGGTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MGSMLNVLPQLTFTLSDWVLHKDIRMSGIEKRRRLHWRETDMQNREIIGRWLDERPLLGDKITLYKEDDKYFLETWFSDG CHSLDEVLMTDTSAGHKVEDVGGNFFGEYFIVTPTQQLQFCNEQGCYFQVDKLMVDIDFSQRVA
Sequences:
>Translated_144_residues MGSMLNVLPQLTFTLSDWVLHKDIRMSGIEKRRRLHWRETDMQNREIIGRWLDERPLLGDKITLYKEDDKYFLETWFSDG CHSLDEVLMTDTSAGHKVEDVGGNFFGEYFIVTPTQQLQFCNEQGCYFQVDKLMVDIDFSQRVA >Mature_143_residues GSMLNVLPQLTFTLSDWVLHKDIRMSGIEKRRRLHWRETDMQNREIIGRWLDERPLLGDKITLYKEDDKYFLETWFSDGC HSLDEVLMTDTSAGHKVEDVGGNFFGEYFIVTPTQQLQFCNEQGCYFQVDKLMVDIDFSQRVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16978; Mature: 16846
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSMLNVLPQLTFTLSDWVLHKDIRMSGIEKRRRLHWRETDMQNREIIGRWLDERPLLGD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCC KITLYKEDDKYFLETWFSDGCHSLDEVLMTDTSAGHKVEDVGGNFFGEYFIVTPTQQLQF EEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEHHCCCCCCCCEEEECCHHHHHH CNEQGCYFQVDKLMVDIDFSQRVA HCCCCCEEEEEEEEEEECHHHCCC >Mature Secondary Structure GSMLNVLPQLTFTLSDWVLHKDIRMSGIEKRRRLHWRETDMQNREIIGRWLDERPLLGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCC KITLYKEDDKYFLETWFSDGCHSLDEVLMTDTSAGHKVEDVGGNFFGEYFIVTPTQQLQF EEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEHHCCCCCCCCEEEECCHHHHHH CNEQGCYFQVDKLMVDIDFSQRVA HCCCCCEEEEEEEEEEECHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA