| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598335
Identifier: 120598335
GI number: 120598335
Start: 1724123
End: 1724659
Strand: Direct
Name: 120598335
Synonym: Sputw3181_1517
Alternate gene names: NA
Gene position: 1724123-1724659 (Clockwise)
Preceding gene: 120598334
Following gene: 120598337
Centisome position: 36.62
GC content: 42.83
Gene sequence:
>537_bases ATGGGAGTATTTATGATCCTTTTTGATTTTAGAACCTTAGACGCTGCAAAGTCTTGGTACAGTGTGAATGATACTGTGAT GGGTGGTTTGTCGCGCAGTAAACTCACTATTTCCCCCTTAGGTTATGGGATTTTTAGTGGTCATGTATCGCTTGCTAATG GTGGCGGATTTGCTTCTGTGCGTTGTGAGTTTGAACAAATTAATGTGGCTGAGTTTACGGGAATTTATCTCGAGCTTGAT GGTGATAGAAGCAAGCATTACAAAGTGAACCTAAAAGATGTTGAAACACCGCAAAGTACTGTCTATCAAGCTGTGATGCC TGCGCCAACGCATCAAACCTTTGGGGTGAGCGGTGCGAGTGCGATTCATTGGCAACGTATCGAAATTCCATTTATCGATT TTTATCCTCAGTGCCGTGGTAAACCGATAGTGCGTGCAGCGATTGATCTTAGCCGACTAACCAGTATAGGGCTGGTAATT GGAGCGCAGCAAAGTGGTGATTTTACTTTAAAAATTAAATCGATAGGCTGTTACTGA
Upstream 100 bases:
>100_bases TGTGAAGCTGCTGAAAACAAAGCTAAACTTGGGTAAAGTGCTGTTATTAGCGTAAAAGAAAGCATCATATGAAGCAGTCA CTTAGGTGGCTGCTTTTTTT
Downstream 100 bases:
>100_bases GCTAAAGATAAAGGGATAAGTAAAGCTTATCCCTTTCGTTTAAACTCTCAGCTCAGCGCGATTTAGGCGCCTACAATCCC TAAGGGTTTGGCATGTTCCC
Product: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELD GDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVI GAQQSGDFTLKIKSIGCY
Sequences:
>Translated_178_residues MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELD GDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVI GAQQSGDFTLKIKSIGCY >Mature_177_residues GVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELDG DRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIG AQQSGDFTLKIKSIGCY
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19523; Mature: 19391
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASV CCEEEEEEEEEEHHHHHCEECCCCCEECCCCCCEEEEEECCCEEEECEEEEECCCCEEEE RCEFEQINVAEFTGIYLELDGDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGAS EEEEEECCEEHEEEEEEEECCCCCCEEEEEEEECCCCHHHHEEEECCCCCCCCCCCCCCC AIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIGAQQSGDFTLKIKSIGCY EEEEEEEECCEEECCCCCCCCEEEEEEHHHHHHCEEEEEEECCCCCCEEEEEEEECCC >Mature Secondary Structure GVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASV CEEEEEEEEEEHHHHHCEECCCCCEECCCCCCEEEEEECCCEEEECEEEEECCCCEEEE RCEFEQINVAEFTGIYLELDGDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGAS EEEEEECCEEHEEEEEEEECCCCCCEEEEEEEECCCCHHHHEEEECCCCCCCCCCCCCCC AIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIGAQQSGDFTLKIKSIGCY EEEEEEEECCEEECCCCCCCCEEEEEEHHHHHHCEEEEEEECCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA