Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120598335

Identifier: 120598335

GI number: 120598335

Start: 1724123

End: 1724659

Strand: Direct

Name: 120598335

Synonym: Sputw3181_1517

Alternate gene names: NA

Gene position: 1724123-1724659 (Clockwise)

Preceding gene: 120598334

Following gene: 120598337

Centisome position: 36.62

GC content: 42.83

Gene sequence:

>537_bases
ATGGGAGTATTTATGATCCTTTTTGATTTTAGAACCTTAGACGCTGCAAAGTCTTGGTACAGTGTGAATGATACTGTGAT
GGGTGGTTTGTCGCGCAGTAAACTCACTATTTCCCCCTTAGGTTATGGGATTTTTAGTGGTCATGTATCGCTTGCTAATG
GTGGCGGATTTGCTTCTGTGCGTTGTGAGTTTGAACAAATTAATGTGGCTGAGTTTACGGGAATTTATCTCGAGCTTGAT
GGTGATAGAAGCAAGCATTACAAAGTGAACCTAAAAGATGTTGAAACACCGCAAAGTACTGTCTATCAAGCTGTGATGCC
TGCGCCAACGCATCAAACCTTTGGGGTGAGCGGTGCGAGTGCGATTCATTGGCAACGTATCGAAATTCCATTTATCGATT
TTTATCCTCAGTGCCGTGGTAAACCGATAGTGCGTGCAGCGATTGATCTTAGCCGACTAACCAGTATAGGGCTGGTAATT
GGAGCGCAGCAAAGTGGTGATTTTACTTTAAAAATTAAATCGATAGGCTGTTACTGA

Upstream 100 bases:

>100_bases
TGTGAAGCTGCTGAAAACAAAGCTAAACTTGGGTAAAGTGCTGTTATTAGCGTAAAAGAAAGCATCATATGAAGCAGTCA
CTTAGGTGGCTGCTTTTTTT

Downstream 100 bases:

>100_bases
GCTAAAGATAAAGGGATAAGTAAAGCTTATCCCTTTCGTTTAAACTCTCAGCTCAGCGCGATTTAGGCGCCTACAATCCC
TAAGGGTTTGGCATGTTCCC

Product: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELD
GDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVI
GAQQSGDFTLKIKSIGCY

Sequences:

>Translated_178_residues
MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELD
GDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVI
GAQQSGDFTLKIKSIGCY
>Mature_177_residues
GVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASVRCEFEQINVAEFTGIYLELDG
DRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGASAIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIG
AQQSGDFTLKIKSIGCY

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19523; Mature: 19391

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASV
CCEEEEEEEEEEHHHHHCEECCCCCEECCCCCCEEEEEECCCEEEECEEEEECCCCEEEE
RCEFEQINVAEFTGIYLELDGDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGAS
EEEEEECCEEHEEEEEEEECCCCCCEEEEEEEECCCCHHHHEEEECCCCCCCCCCCCCCC
AIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIGAQQSGDFTLKIKSIGCY
EEEEEEEECCEEECCCCCCCCEEEEEEHHHHHHCEEEEEEECCCCCCEEEEEEEECCC
>Mature Secondary Structure 
GVFMILFDFRTLDAAKSWYSVNDTVMGGLSRSKLTISPLGYGIFSGHVSLANGGGFASV
CEEEEEEEEEEHHHHHCEECCCCCEECCCCCCEEEEEECCCEEEECEEEEECCCCEEEE
RCEFEQINVAEFTGIYLELDGDRSKHYKVNLKDVETPQSTVYQAVMPAPTHQTFGVSGAS
EEEEEECCEEHEEEEEEEECCCCCCEEEEEEEECCCCHHHHEEEECCCCCCCCCCCCCCC
AIHWQRIEIPFIDFYPQCRGKPIVRAAIDLSRLTSIGLVIGAQQSGDFTLKIKSIGCY
EEEEEEEECCEEECCCCCCCCEEEEEEHHHHHHCEEEEEEECCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA