| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598218
Identifier: 120598218
GI number: 120598218
Start: 1584534
End: 1585160
Strand: Direct
Name: 120598218
Synonym: Sputw3181_1395
Alternate gene names: NA
Gene position: 1584534-1585160 (Clockwise)
Preceding gene: 120598217
Following gene: 120598222
Centisome position: 33.65
GC content: 34.29
Gene sequence:
>627_bases GTGATTGCAGCTGCAGGTATGGGAGCGAGAATTGGTCTTGGCATTCCGAAATGTATGATTGATATTGAAGGAGCAAATCT CTTATCAAGGTTGATTAATTTACTTGATAGCTATTGCAAAAATATAGTTGTAGTTGTTGGTTATCGTGAAGAAATGGTTG TTGAATATTGTTCTGTTTATCACCGTAATGTTATTATTGCAAGAAATCCTGATTATGCAACGACTAATACAGCTTATAGT TATTATCAAGGAGCTAAAAATTTAGTAGGGAAAACATTATATATAGATGGTGATCTATTAGTTGAAAAAAATAGCATGCT AGCTTTTCTTAAGAGTGCAAGCTCTGTTGATGTTTTAATAGGGGTGGCAAAAGCAAATAGTGAACAAGCTGTATACGTTG GGTTGGAAGGCGAATCTGTCACCTATTTTAATCGAAATTATCAAGGTGAAGAGTATGAGTGGGCAAATGTTTTTGTCGCG CCTAGTAACTTCTTGACAAAAATAGATGGTTATGTTTTTGAATCAATAGAGTTAACTTTACCACTTCCTTCAAAAGAGAT CGTATTAAGGGAAGTTGATACTAAAGATGATCTAGAACAAGCTATTCTATTTTGTCGTTCTTGGTGA
Upstream 100 bases:
>100_bases TTGCATTTGGGGCGATTCATCACCCTCCTAAATCACTCGTAAATTTAGCAAATTATATTGTTCATAGTGGGGATTCTTTA TGCAACTTATTGAAAATGTT
Downstream 100 bases:
>100_bases TCTTTTTAAGATGGAATATTAAAAGTAGATAGTTATTTCTATCTGCTTTTAAGTTGAAAACTCTGCTCGAATGGGTTGCT TTTGTAATAAAATGGGGATT
Product: putative sugar nucleotidyltransferase
Products: NA
Alternate protein names: Nucleotidyl Transferase
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MIAAAGMGARIGLGIPKCMIDIEGANLLSRLINLLDSYCKNIVVVVGYREEMVVEYCSVYHRNVIIARNPDYATTNTAYS YYQGAKNLVGKTLYIDGDLLVEKNSMLAFLKSASSVDVLIGVAKANSEQAVYVGLEGESVTYFNRNYQGEEYEWANVFVA PSNFLTKIDGYVFESIELTLPLPSKEIVLREVDTKDDLEQAILFCRSW
Sequences:
>Translated_208_residues MIAAAGMGARIGLGIPKCMIDIEGANLLSRLINLLDSYCKNIVVVVGYREEMVVEYCSVYHRNVIIARNPDYATTNTAYS YYQGAKNLVGKTLYIDGDLLVEKNSMLAFLKSASSVDVLIGVAKANSEQAVYVGLEGESVTYFNRNYQGEEYEWANVFVA PSNFLTKIDGYVFESIELTLPLPSKEIVLREVDTKDDLEQAILFCRSW >Mature_208_residues MIAAAGMGARIGLGIPKCMIDIEGANLLSRLINLLDSYCKNIVVVVGYREEMVVEYCSVYHRNVIIARNPDYATTNTAYS YYQGAKNLVGKTLYIDGDLLVEKNSMLAFLKSASSVDVLIGVAKANSEQAVYVGLEGESVTYFNRNYQGEEYEWANVFVA PSNFLTKIDGYVFESIELTLPLPSKEIVLREVDTKDDLEQAILFCRSW
Specific function: Unknown
COG id: COG1213
COG function: function code M; Predicted sugar nucleotidyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23184; Mature: 23184
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAAAGMGARIGLGIPKCMIDIEGANLLSRLINLLDSYCKNIVVVVGYREEMVVEYCSVY CEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHH HRNVIIARNPDYATTNTAYSYYQGAKNLVGKTLYIDGDLLVEKNSMLAFLKSASSVDVLI HCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEECCHHEEEHHCCCCEEEEE GVAKANSEQAVYVGLEGESVTYFNRNYQGEEYEWANVFVAPSNFLTKIDGYVFESIELTL EEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEEEECCHHHHHHCCEEEEEEEEEE PLPSKEIVLREVDTKDDLEQAILFCRSW CCCCCCEEEEECCCHHHHHHHHHHHCCC >Mature Secondary Structure MIAAAGMGARIGLGIPKCMIDIEGANLLSRLINLLDSYCKNIVVVVGYREEMVVEYCSVY CEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHH HRNVIIARNPDYATTNTAYSYYQGAKNLVGKTLYIDGDLLVEKNSMLAFLKSASSVDVLI HCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCEEEEECCHHEEEHHCCCCEEEEE GVAKANSEQAVYVGLEGESVTYFNRNYQGEEYEWANVFVAPSNFLTKIDGYVFESIELTL EEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEEEECCHHHHHHCCEEEEEEEEEE PLPSKEIVLREVDTKDDLEQAILFCRSW CCCCCCEEEEECCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA