| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598217
Identifier: 120598217
GI number: 120598217
Start: 1584031
End: 1584537
Strand: Direct
Name: 120598217
Synonym: Sputw3181_1394
Alternate gene names: NA
Gene position: 1584031-1584537 (Clockwise)
Preceding gene: 120598213
Following gene: 120598218
Centisome position: 33.64
GC content: 31.16
Gene sequence:
>507_bases ATGGCATTATTGACAAAGCTAACTATGGACGGTGTGATAGATTTTATCTCATCTTTTAAATTGAGAGTATTATTGTTATC AACAGTTTCAATTGAGAGAATTAACTCAATTATAGATGAAGTACCATTAGACTTAAAATTATTAAAATTTATAAAAGACA ATCGTGAGCAATGTTTTATTGTAACCGGCAATATTGACCTTTGGATTAAGCCTTTACTAGATAAGTTTGAGTGTAATTAT TATTCATCATCTGCTCAATATAGTGATGGTTATATCAAACTTGATAAAGTCTTAGTTAAATCTGAAGCGATAAAAAATAT CAGAGCAATGGGATTTGACAGGGTTATTGCTGTTGGTGACGGAATGAATGATGTTCCGATGTTTCTCGAGTCAGATATAA AAATTGCATTTGGGGCGATTCATCACCCTCCTAAATCACTCGTAAATTTAGCAAATTATATTGTTCATAGTGGGGATTCT TTATGCAACTTATTGAAAATGTTGTGA
Upstream 100 bases:
>100_bases GTTTTTATGAAAAGCTGATCGCCAGATCACACTATTTAAATTCTGGAATTAGCTGCGGAATGACGGATGTATTGCTTCAG AATTAAATATTTCTGAGGAA
Downstream 100 bases:
>100_bases TTGCAGCTGCAGGTATGGGAGCGAGAATTGGTCTTGGCATTCCGAAATGTATGATTGATATTGAAGGAGCAAATCTCTTA TCAAGGTTGATTAATTTACT
Product: hypothetical protein
Products: NA
Alternate protein names: HAD Family Hydrolase
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MALLTKLTMDGVIDFISSFKLRVLLLSTVSIERINSIIDEVPLDLKLLKFIKDNREQCFIVTGNIDLWIKPLLDKFECNY YSSSAQYSDGYIKLDKVLVKSEAIKNIRAMGFDRVIAVGDGMNDVPMFLESDIKIAFGAIHHPPKSLVNLANYIVHSGDS LCNLLKML
Sequences:
>Translated_168_residues MALLTKLTMDGVIDFISSFKLRVLLLSTVSIERINSIIDEVPLDLKLLKFIKDNREQCFIVTGNIDLWIKPLLDKFECNY YSSSAQYSDGYIKLDKVLVKSEAIKNIRAMGFDRVIAVGDGMNDVPMFLESDIKIAFGAIHHPPKSLVNLANYIVHSGDS LCNLLKML >Mature_167_residues ALLTKLTMDGVIDFISSFKLRVLLLSTVSIERINSIIDEVPLDLKLLKFIKDNREQCFIVTGNIDLWIKPLLDKFECNYY SSSAQYSDGYIKLDKVLVKSEAIKNIRAMGFDRVIAVGDGMNDVPMFLESDIKIAFGAIHHPPKSLVNLANYIVHSGDSL CNLLKML
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18914; Mature: 18782
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLTKLTMDGVIDFISSFKLRVLLLSTVSIERINSIIDEVPLDLKLLKFIKDNREQCFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEE VTGNIDLWIKPLLDKFECNYYSSSAQYSDGYIKLDKVLVKSEAIKNIRAMGFDRVIAVGD EECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECC GMNDVPMFLESDIKIAFGAIHHPPKSLVNLANYIVHSGDSLCNLLKML CCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHC >Mature Secondary Structure ALLTKLTMDGVIDFISSFKLRVLLLSTVSIERINSIIDEVPLDLKLLKFIKDNREQCFI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEE VTGNIDLWIKPLLDKFECNYYSSSAQYSDGYIKLDKVLVKSEAIKNIRAMGFDRVIAVGD EECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECC GMNDVPMFLESDIKIAFGAIHHPPKSLVNLANYIVHSGDSLCNLLKML CCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA