| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 1057 [H]
Identifier: 120598180
GI number: 120598180
Start: 1537014
End: 1537634
Strand: Direct
Name: 1057 [H]
Synonym: Sputw3181_1357
Alternate gene names: 120598180
Gene position: 1537014-1537634 (Clockwise)
Preceding gene: 120598179
Following gene: 120598181
Centisome position: 32.64
GC content: 43.96
Gene sequence:
>621_bases GTGGAAATTTATAGCACAGAAGAACAACAAGTTGATGCTATCAAACAGTTCTGGAAAGATTATGGAACTTCCATTTTAAT AGGTGCTGTCGTGGGCCTTGGTGGCCTATACGGTTGGAATTATTATTCCGATATGAAAGTGGCTAAAGCGGAGGAAGCGT CAAAAGCCTTTCAAGCATTGACGACCAAATCTGCCGATGAAGCCGCCATGCTAGCGGGTGTTGCTGAGTTTTCAAAAAAT CACGATCAAAAAGGTTATCAAGCACTGTTGGATCTTATCGTTGCCAAAACGGCTGTAGAAGCAAAGGATTACCCTAAGGC TATCGATGCGTTGAACAAGGTTATTACGACCAAGCCAGGGGCCAGTTTAGATACAATTGCAACCTTACGCTTGGCCCGTA TTCAGGCGGAGCTTGGTCAAATTGATGCCGGGTTAGCGACCTTAGAAAAAGTATCCGATAAAGCCTTTTTAGCTCAACGT GAAGAGTTAAAAGGTGACTTCCTTGTGCGTCAAGGTGACGTTGAGAAAGCAAAAACGGCTTATCAAACCGCCATGGATAA CGGTGGTGTGGTAACAAGCCCGGCACTTAAAATCAAACTTGATAACCTAAATCAGGCATAA
Upstream 100 bases:
>100_bases ACAGTGAAACATTTACGCAATGACAACGAACAACAACAGGTTGCTCGAAATGCCTTAAGTGCATTTTTAGCTGAACTTAC CAAATAAAGGGGATGTGCGC
Downstream 100 bases:
>100_bases GGGATCCCTTGATGAAGTCTTGGTGCAAAAACCTGTTAGCCGCTGGATTGAGTCTAGCGATGTTATCCGCCTGTTCATCG AGTGATGTTGAAGAAGAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MEIYSTEEQQVDAIKQFWKDYGTSILIGAVVGLGGLYGWNYYSDMKVAKAEEASKAFQALTTKSADEAAMLAGVAEFSKN HDQKGYQALLDLIVAKTAVEAKDYPKAIDALNKVITTKPGASLDTIATLRLARIQAELGQIDAGLATLEKVSDKAFLAQR EELKGDFLVRQGDVEKAKTAYQTAMDNGGVVTSPALKIKLDNLNQA
Sequences:
>Translated_206_residues MEIYSTEEQQVDAIKQFWKDYGTSILIGAVVGLGGLYGWNYYSDMKVAKAEEASKAFQALTTKSADEAAMLAGVAEFSKN HDQKGYQALLDLIVAKTAVEAKDYPKAIDALNKVITTKPGASLDTIATLRLARIQAELGQIDAGLATLEKVSDKAFLAQR EELKGDFLVRQGDVEKAKTAYQTAMDNGGVVTSPALKIKLDNLNQA >Mature_206_residues MEIYSTEEQQVDAIKQFWKDYGTSILIGAVVGLGGLYGWNYYSDMKVAKAEEASKAFQALTTKSADEAAMLAGVAEFSKN HDQKGYQALLDLIVAKTAVEAKDYPKAIDALNKVITTKPGASLDTIATLRLARIQAELGQIDAGLATLEKVSDKAFLAQR EELKGDFLVRQGDVEKAKTAYQTAMDNGGVVTSPALKIKLDNLNQA
Specific function: Unknown
COG id: COG2976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0070 family [H]
Homologues:
Organism=Escherichia coli, GI1788860, Length=209, Percent_Identity=31.1004784688995, Blast_Score=104, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018704 - InterPro: IPR011990 [H]
Pfam domain/function: PF09976 DUF2133 [H]
EC number: NA
Molecular weight: Translated: 22268; Mature: 22268
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIYSTEEQQVDAIKQFWKDYGTSILIGAVVGLGGLYGWNYYSDMKVAKAEEASKAFQAL CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHH TTKSADEAAMLAGVAEFSKNHDQKGYQALLDLIVAKTAVEAKDYPKAIDALNKVITTKPG HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ASLDTIATLRLARIQAELGQIDAGLATLEKVSDKAFLAQREELKGDFLVRQGDVEKAKTA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH YQTAMDNGGVVTSPALKIKLDNLNQA HHHHHCCCCEEECCEEEEEECCCCCC >Mature Secondary Structure MEIYSTEEQQVDAIKQFWKDYGTSILIGAVVGLGGLYGWNYYSDMKVAKAEEASKAFQAL CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHH TTKSADEAAMLAGVAEFSKNHDQKGYQALLDLIVAKTAVEAKDYPKAIDALNKVITTKPG HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ASLDTIATLRLARIQAELGQIDAGLATLEKVSDKAFLAQREELKGDFLVRQGDVEKAKTA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH YQTAMDNGGVVTSPALKIKLDNLNQA HHHHHCCCCEEECCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA